Homology
t2prhd is a Perl script which generates simple diagrams that highlight relationships of sequence repeats detected by using a profile HMM in two sequences. Homology relations are identified on the basis of the phylogeny of repeats.
Platforms: *nix
License: Freeware | Size: 133.12 KB | Download (37): t2prhd Download |
Ace::Object is a Perl module to manipulate Ace Data Objects. SYNOPSIS # open database connection and get an object use Ace; $db = Ace->connect(-host => beta.crbm.cnrs-mop.fr, -port => 20000100); $sequence = $db->fetch(Sequence => D12345); # Inspect the object $r =...
Platforms: *nix
License: Freeware | Size: 296.96 KB | Download (96): Ace::Object Download |
A set of programs for multiple sequence alignment and analysis. The programs use an expandable user interface which allows the addition of external analysis functions without any rewriting of code. The system supports several data types, nucleic and amino acid sequences, text, and masking...
Platforms: Mac
License: Freeware | Size: 42.8 MB | Download (49): MacGDE for Mac OS Download |
PanOCT, Pan-genome Ortholog Clustering Tool, is a program written in PERL for pan-genomic analysis of closely related prokaryotic species or strains. Unlike traditional graph-based ortholog detection programs, it uses micro synteny or conserved gene neighborhood (CGN) in addition to homology to...
Platforms: Mac, Linux
License: Freeware | Size: 6.6 MB | Download (44): PanOCT Download |
Bio::Prospect:: is a Perl API to thePROSPECT threading application. The modules provide for programexecution, results parsing, multiple sequence alignments inferred frompairwise sequence-structure alignments, and rudimentary homology models.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 52.77 KB | Download (45): Prospect Interface Download |
t2prhd is a Perl script which generates simple diagrams that highlight relationships of sequence repeats detected by using a profile HMM in two sequences. Homology relations are identified on the basis of the phylogeny of repeats.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 129.98 KB | Download (44): t2prhd Download |
Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid...
Platforms: Mac
License: Freeware | Size: 13.36 MB | Download (42): DeepView Download |