Analyze Dna Sequence

BioFace is simple software for editing and analyzing DNA, RNA, and protein sequences that is written in Java using SWT and JFace as libraries. Opening GenBank, FASTA, EMBL, or simple sequence files and analizing these sequences can be done. Platforms: *nix

nebseq is a Python module for basic biological sequence manipulations. Import as usual >>> import nebseq Reverse complements The only note here is that revcomp does not check the input sequence to see if it looks like DNA or RNA. >>> nebseq.revcomp('ACGT') 'ACGT' >>>... Platforms: *nix

View, Edit and Analyze Hexadecimal Data and Binary Files of any Size. Free Hex Editor Neo is a large files optimized freeware hex editor for everyone who works with ASCII, hex, decimal, float, double and binary data. Make patches with just two mouse clicks, manipulate your EXE, DLL, DAT, AVI,... Platforms: Windows

WikSpeak is a tool that allows non-native English speakers to analyze the correlation between the pronunciation and spelling of English words. This program is a simple and fast graphic interface which can retrieve the phonetic transcription ( IPA ) and the pronunciation of any English word, while... Platforms: *nix

Blast Viewer gives you a graphic interface to view reports produced by search systems in NCBI and EBI BLAST databases.Blast Viewer is a simple to use software designed for the daily analysis of biological sequences. It lets you view and analyze the enormous quantities of data that come from a... Platforms: Windows

rpm-analyzer is a graphical tool to help you analyze rpm dependencies. You can easily see what packages are required to install or remove a specific rpm. RPM-Analyzer project may also help you to maintain a Red Hat-based distribution by providing hdlist and comps.xml analysis tools.. RPM... Platforms: *nix

App::Session can represents a sequence of multiple events perhaps executed in separate processes. SYNOPSIS # ... official way to get a Session object ... use App; $session = App->context(); $context = $session->session(); # get the session # any of the following named parameters may be... Platforms: *nix

Shade is an acronym which stands for Steganographically Hide and Analyze Data Entries. Shade LSB project is a versatile and feature-rich program designed to analyze and manipulate LSBs (least significant bits) of files, attempting to either hide or pluck out data. LSB manipulation is a form of... Platforms: *nix

Bio::Tools::Run::PiseApplication::consensus is a Perl module. Bioperl class for: CONSENSUS Identification of consensus patterns in unaligned DNA and protein sequences (Hertz, Stormo) References: G.Z. Hertz and G.D. Stormo. Identification of consensus patterns in unaligned DNA and protein... Platforms: *nix

freq is a Perl script used to analyze the last log. It works on Linux systems, but may also work on other UNIX-based systems that have the same format for their lastlog. I have added some preliminary support for SunOS and IRIX, though this has not been tested to the point where I would know if... Platforms: *nix

The STed is the high-performance MIDI sequence editor / Music composer system. It had been working on X680x0 old Japanese personal workstation. The STed was originally developed by Mr. Takayuki "TURBO" Toda. Through many volunteers good office the source code of the STed has been opened. Since... Platforms: *nix

AlignAid is a Perl module that easily run sequence alignments locally or on a cluster. SYNOPSIS use AlignAid; # create an AlignAid object # a single, locally run blast job is the default my $job = AlignAid->new( db => my_blast_db, dir => $dir, fasta => my_query.fa, prog_args => V=20... Platforms: *nix

Here is the description you can find at Freshmeat: Gujin is a PC boot loader which can analyze your partitions and filesystems. It finds the Linux kernel images available, as well as other bootable partitions (for *BSD, MS-DOS, Windows, etc.), files (*.kgz) and bootable disk images (*.bdi), and... Platforms: *nix

Bio::Seq is a sequence object, with features. SYNOPSIS # This is the main sequence object in Bioperl # gets a sequence from a file $seqio = Bio::SeqIO->new( -format => embl , -file => myfile.dat); $seqobj = $seqio->next_seq(); # SeqIO can both read and write sequences; see Bio::SeqIO #... Platforms: *nix

Bio::PrimarySeqI is a Perl Interface definition for a Bio::PrimarySeq. SYNOPSIS # Bio::PrimarySeqI is the interface class for sequences. # If you are a newcomer to bioperl, you should # start with Bio::Seq documentation. This # documentation is mainly for developers using # Bioperl. #... Platforms: *nix

MySQA program is a useful program to analyze log files created by MySQL slow queries or queries that dont use indexes. About MySQL: MySQL is a multithreaded, multi-user, SQL (Structured Query Language) Database Management System (DBMS) with an estimated six million installations. MySQL AB... Platforms: *nix

Bio::Tools::CodonTable is a bioperl codon table object. SYNOPSIS # This is a read-only class for all known codon tables. The IDs are # the ones used by nucleotide sequence databases. All common IUPAC # ambiguity codes for DNA, RNA and animo acids are recognized. # to use use... Platforms: *nix

PM2V is a library for parallel encoding of a video sequence in MPEG II. PM2V is a project developed by students of the Ecole Nationale Supérieure dElectronique et de Radioelectronique de Bordeaux. ENSERB is a high national school of engineering based in Bordeaux (France). It has three... Platforms: *nix

Net::Traces::SSFNet is a Perl module to analyze traces generated by SSFNet. SYNOPSIS use Net::Traces::SSFNet qw( droptail_record_player droptail_record_plotter ); $Net::Traces::SSFNet::PRINT_EXACT_DECIMAL_DIGITS = 0; $Net::Traces::SSFNet::SHOW_SOURCES = 1; $Net::Traces::SSFNet::SHOW_STATS... Platforms: *nix

PTT helps users to analyze and understand correction and performance problems for multi-threaded applications. It shows when a program calls NPTL routines and when it exits from them, with details about the internal mechanisms of the library. Three different trace formats are provided: a... Platforms: *nix