Analyze Dna Sequence

The fastest way to remove duplicates from a sequence depends on some pretty subtle properties of the sequence elements, such as whether they're hashable, and whether they support full comparisons. This script defines the unique() function that tries three methods, from fastest to slowest,... Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script contains a function that given a sequence and a number n as parameters, returns the th permutation of the sequence (always as a list). Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script allows you to split up a sequence in same-size (if possible) parts. Platforms: Windows, Mac, *nix, Python, BSD Solaris

Getting min/max in a sequence script allows you to find the min/max value in a sequence as compared to a reference. Platforms: Windows, Mac, *nix, Python, BSD Solaris

This function provides farey sequence, F(n), for any integer n.There's probably a more elegant solution out there, but I couldn't find it. Note: it doesn't prepend (0,1) and append (1,1)... Platforms: Windows, Mac, *nix, Python, BSD Solaris

It will ask for input the bit stream then generate pseudorandom bit sequence, finally give output as direct sequence spread spectrum..... Platforms: Matlab

Euler Angles To Quaternion Conversion for six basic sequence of rotations around X(Roll),Y(Pitch) and Z(Yaw) axis.Allowed Sequences: xyz, xzy, yxz, yzx, zxy, zyx. Platforms: Matlab

alculate the normalized partial energy sequence (NPES) for a given signal vector X.If a particular transform is capable of capturing the key features of a signal in few coefficients, the NPES will approach unity for relatively quickly.Ref: Percival and Walden, Wavelet Methods for Time Series... Platforms: Matlab

The PRBS are based on 3 to 9 bits memory delays and put out 2^3 -1 to 2^9 -1 binary sequence length. Usage: these generators can be used in process identification as noise source on command signal Platforms: Matlab

These tools read and visualize Analyze MRI data files (.hdr, .img). Further work will create functions to write files. See http://eeg.sourceforge.net/ for more information and regular updates. Platforms: Matlab

SeqTEx: identification of average Next-Generation Sequence DNA length from cross-correlation This project is in development and will be submitting the manuscript soon. Check back for more information about using this program later. Platforms: Mac

Bio2Midi converts the text of a DNA or protein sequence to a MIDI file, which you may immediately audition, or import into any MIDI sequencer for further compositional processing. Choose to listen to the sequences as 4-note DNA bases, or as 20-note protein amino acids, or both at once. You can... Platforms: Windows

Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =... Platforms: *nix

Serial Cloner is a light molecular biology software. Serial Cloner reads and write DNA Strider-compatible files and import and export files in the universal FASTA format (as well as in pDRAW32 format). Powerful graphical display tools and simple interfaces help the analysis and construction steps... Platforms: Mac

ClaMS is a handy application specially designed to offer you a sequence composition-based classifier for metagenomic sequences. ClaMS works by capturing signatures of each sequence based on the sequence composition. Each sequence is modeled as a walk in a de Bruijn graph with underlying Markov... Platforms: Windows

Primer Design is a simple utility created in order to design DNA primers for mutagenesis in the BGME lab (JHU). It allows users to select or enter background sequence and add current and new mutations. During the design process, users are presented with various updating checks to guide them. Platforms: Windows

The app will search track 1 of an exported FCP sequence XML for the first 'TCR Plus filter, then will analyze it and create a basic filter. Now all clips will be parsed and the information requested by the filter will be retrieved, the basic filter will be applied to the clip and the needed... Platforms: Mac

A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence... Platforms: Mac

Wild-DNA Slide Show: simple picture slide show using pixel shaders 2.0 to display your pictures with cool effects. Platforms: Windows

Wild-DNA PortaLaunch: simple popup menu hidden in a systray icon to launch portable apps. In xml customization for the popup menu, and can launch applications without full path. Icons in menu can be used from libraries (exe, dll...) or bitmaps (png, jpg...) Platforms: Windows, Other