Analyze Dna Sequence
DNATREE is a computer program that simulates the branching of an evolutionary tree, using a model of random branching of lineages. It then evolves a DNA sequence along this tree, and displays the resulting sequences. The user can save the tree and the sequences if they want to use them in other...
Platforms: Windows
License: Freeware | Download (443): DNATREE Download |
DNATREE is a computer program that simulates the branching of an evolutionary tree, using a model of random branching of lineages. It then evolves a DNA sequence along this tree, and displays the resulting sequences. The user can save the tree and the sequences if they want to use them in other...
Platforms: Linux
License: Freeware | Download (468): DNATREE for Linux Download |
DNATREE is a computer program that simulates the branching of an evolutionary tree, using a model of random branching of lineages. It then evolves a DNA sequence along this tree, and displays the resulting sequences. The user can save the tree and the sequences if they want to use them in other...
Platforms: Mac
License: Freeware | Download (424): DNATREE for Mac OS X Download |
LDhat is a C/C++ written project that was specially designed for the analysis of recombination rates from population genetic data.
The following programs are included:
· convert: Simple manipulation of DNA sequence data
· pairwise: Parametric and nonparametric analyses of recombination
·...
Platforms: Windows
License: Freeware | Download (421): LDhat Download |
Plasmid Entry Form is a simple, easy to use application designed to help you create plasmid database forms for BGME lab.
This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.
Platforms: Windows
License: Freeware | Download (439): Plasmid Entry Form Download |
HapEdit is an instrument that's been specially built in order to help the user assess the accuracy of haplotype assembly. This is done using the next-generation sequencing technologies.
HapEdit is a tool that was created with the help of the Java programming language and can run on multiple...
Platforms: Windows
License: Freeware | Download (417): HapEdit Download |
JBoss DNA is a repository and set of tools that make it easy to capture, version, analyze, and understand the fundamental building blocks of information.As models, service and process definitions, schemas, source code, and other artifacts are added to the repository, JBoss DNA "sequences" the...
Platforms: Java
License: Freeware | Size: 4.71 MB | Download (44): JBoss DNA Download |
BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (62): BSmapper Download |
Bio::Restriction::Enzyme is a single restriction endonuclease (cuts DNA at specific locations). SYNOPSIS # set up a single restriction enzyme. This contains lots of # information about the enzyme that is generally parsed from a # rebase file and can then be read back use...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (141): Bio::Restriction::Enzyme Download |
Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db...
Platforms: *nix
License: Freeware | Size: 82.94 KB | Download (101): Bio::Tools::Run::PiseApplication::fasta Download |
UML::Sequence is a Perl module to render UML sequence diagrams, often by running the code. SYNOPSIS use UML::Sequence; my $tree = UML::Sequence->new(@methods, @outline, &parse_method); print $tree->build_xml_sequence(Title); To use this package, or see how to use it, see genericseq.pl...
Platforms: *nix
License: Freeware | Size: 122.88 KB | Download (159): UML::Sequence Download |
UML::Sequence::JavaSeq is a Perl module for use with genericseq.pl script, works on compiled Java programs. SYNOPSIS genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello > Hello.xml seq2svg.pl Hello.xml > Hello.svg OR genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello |...
Platforms: *nix
License: Freeware | Size: 122.88 KB | Download (92): UML::Sequence::JavaSeq Download |
Chart::Sequence is a sequence Perl class. SYNOPSIS use Chart::Sequence; my $s = Chart::Sequence->new( Nodes => [qw( A B C )], Messages => [ [ A => B => "Message 1" ], [ B => A => "Ack 1" ], [ B => C => "Message 2" ], ], ); # or # my $s = Chart::Sequence->new( SeqMLInput =>...
Platforms: *nix
License: Freeware | Size: 15.36 KB | Download (105): Chart::Sequence Download |
xor-analyze provides a program for cryptanalyzing xor "encryption" with variable key length.. Thomas Habets useful programs
Platforms: *nix
License: Freeware | Size: 26.62 KB | Download (165): xor-analyze Download |
Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in...
Platforms: *nix
License: Freeware | Size: 2.3 MB | Download (122): Sequence Analysis Download |
JMotifFinder is a small, simple, easy to use application designed to offer users a graphical utility to find DNA Motifs such as Primers in huge EMBL Files.
If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and...
Platforms: Windows
License: Freeware | Download (430): JMotifFinder Download |
Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time.
SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences).
The...
Platforms: Windows
License: Freeware | Download (471): Short Sequence Location Mapper Download |
Creates an Excel spreadsheet report about the video clips, audio clips and markers you've used in your edited sequence. The report includes sheets for: Clips, Sequence Markers, Clip Markers, Clip Filters, and Reels.
Sequence Clip Reporter takes the tedious work out of creating clip usage reports...
Platforms: Mac
License: Freeware | Size: 3.6 MB | Download (479): Sequence Clip Reporter for Mac OS Download |
Creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options.
Some bioinformatics features are:
- GenBank searching and viewing (linear and circular views)
- Multiple alignment of...
Platforms: Mac
License: Freeware | Size: 30.4 MB | Download (54): CLC Sequence Viewer for Mac OS Download |
CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. Bioinformatics features in CLC Sequence Viewer Multiple alignment of DNA, RNA, and...
Platforms: Windows
License: Freeware | Size: 38 MB | Download (45): CLC Sequence Viewer 64-bit Download |