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Sequencing freeware
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Sequencing

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Released: November 22, 2012  |  Added: November 22, 2012 | Visits: 304

Mac Sequence View for Mac OS Have you ever needed to generate easy to read Quality Reports for your DNA sequencing? Have you ever needed to sort your DNA trace files by quality? Have you ever needed to change the comments tag in your Chromatograms? If so, this software suite is for you. This bundle includes: Mac Sequence...



Platforms: Mac

License: Freeware Size: 2.8 MB Download (33): Mac Sequence View for Mac OS Download

Released: September 08, 2012  |  Added: September 08, 2012 | Visits: 419

CLC Genomics Workbench for Mac OS Using super-fast, integrated, high-performance computing algorithms, CLC Genomics Workbench sets a new standard for desktop based reference assembly and de novo assembly of SOLiD, Solexa, 454, and Helicos sequencing data# De novo assembly of Sanger, 454, Solexa, Helicos, and SOLiD data -...





Platforms: Mac

License: Freeware Size: 55 MB Download (27): CLC Genomics Workbench for Mac OS Download

Released: June 06, 2012  |  Added: June 06, 2012 | Visits: 183

anntools AnnTools is an efficient, fast and robust bioinformatics tool annotating SNP and CNV calls generated from sequencing and microarray data.


Platforms: Mac, BSD, Linux

License: Freeware Size: 1.46 MB Download (27): anntools Download

Released: October 13, 2012  |  Added: October 13, 2012 | Visits: 214

Grinder Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.


Platforms: Windows, Mac, Linux

License: Freeware Size: 157.84 KB Download (27): Grinder Download

Released: December 06, 2012  |  Added: December 06, 2012 | Visits: 194

LutefiskXP LutefiskXP is ANSI C compliant software used to perform de novo peptide sequencing from tandem mass spectra.


Platforms: Windows, Mac, Solaris

License: Freeware Size: 772.88 KB Download (27): LutefiskXP Download

Released: September 02, 2012  |  Added: September 02, 2012 | Visits: 180

MIDesigner MIDesigner (MID Intelligent Designer) is a utility to design multiplex identifier (MID) primers for use in sequencing projects. Thus, it is similar in intent to Barcrawl.


Platforms: Windows, Mac, Linux

License: Freeware Size: 37.94 KB Download (27): MIDesigner Download

Released: September 07, 2012  |  Added: September 07, 2012 | Visits: 422

Open Media Studio OMS is used for sequencing events on a timeline, allowing control of software and hardware for music, video, and demoscene productions. It is fairly similar to trackers, which are music editors, famous for their use in games and demoscene productions.


Platforms: Windows, Mac, Linux

License: Freeware Size: 3.87 KB Download (28): Open Media Studio Download

Added: May 10, 2013 | Visits: 242

PerlPrimer PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR) and sequencing. It aims to automate and simplify the process of primer design.PerlPrimer's current features include the following: - Calculation of...


Platforms: *nix, Perl, BSD

License: Freeware Download (29): PerlPrimer Download

Released: June 07, 2012  |  Added: June 07, 2012 | Visits: 200

Pyrotagger MID Adjust Pyrotagger only accepts sequencing reads that have MID sequences (a.k.a barcodes, tags), and all of them must have the same length. When you have no MIDs, or variable-length MIDs, Pyrotagger MID Adjust appends new MIDs or extends existing ones to satisfy Pyrotagger requirements.


Platforms: Windows, Mac, Linux

License: Freeware Size: 75.12 KB Download (27): Pyrotagger MID Adjust Download

Added: November 30, 2013 | Visits: 334

SeqExpress SeqExpress is a cross-platform software that estimates gene/isoform expressioin level via mRNA-Seq data. SeqExpress exams the Sequencing bias in mRNA-Seq and correct it to get more accurate estimation.


Platforms: *nix

License: Freeware Size: 163.84 KB Download (29): SeqExpress Download

Released: October 12, 2012  |  Added: October 12, 2012 | Visits: 168

SeqGenomeBrowser SeqGenome Browser, a mini cross-platform local genome browser, was designed for visualizing next-generation sequencing data. It is light, fast and easy to use.


Platforms: Windows, Mac, Linux

License: Freeware Size: 6.46 MB Download (27): SeqGenomeBrowser Download

Released: December 13, 2012  |  Added: December 13, 2012 | Visits: 198

Timina Timina is a Java web-based application for automation of all steps of a genome sequencing project: submission, assembly and annotation of sequences.


Platforms: Mac, BSD, Linux

License: Freeware Size: 8.24 MB Download (27): Timina Download

Released: June 12, 2012  |  Added: June 12, 2012 | Visits: 144

VCAKE VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.


Platforms: Windows, Mac, Linux

License: Freeware Size: 101.03 KB Download (27): VCAKE Download

Added: November 11, 2013 | Visits: 244

SlideViewer SlideViewer is an automatic picture viewer. Just point SlideViewer at directories containing images, and it will sequentially display the images as a slide-show. Convenient controls enable altering the speed, pausing, going-back, as well as sequencing manually.


Platforms: *nix

License: Freeware Size: 81.92 KB Download (27): SlideViewer Download

Added: July 10, 2013 | Visits: 198

GTween Beta 5 It will help program tweening effects, animations, and transitions.It is comprised of 4 key classes: GTween (tweening engine), GTweenTimeline (time control features), GTweenFilters (useful in tweening filters) and GTweeny (light version of GTween).Here are some key features of "GTween":dlTE...


Platforms: Flash

License: Freeware Size: 604.16 KB Download (20): GTween Beta 5 Download

Added: March 26, 2013 | Visits: 173

SCF writer WRITESCF writes SCF formatted files.SCF format files are used to store data from DNA sequencing instruments. This version of WRITESCF only adds the raw traces to the SCF files, it does not write the bases or scores.


Platforms: Matlab

License: Freeware Size: 10 KB Download (18): SCF writer Download

Added: October 19, 2013 | Visits: 218

Cirklz Cirklz is a probabilistic step-sequencer for Native Instruments Reaktor 5. It has a simple interface, that produces complex loops that never repeat. Use it to control other softsynths, hardware synths, fx and drum machines. Features # 4 track sequencer # MIDI Out # Probability sequencing # Easy...


Platforms: Mac

License: Freeware Size: 1003.52 KB Download (16): Cirklz Download

Added: September 10, 2013 | Visits: 142

SRMA Welcome to the SRMA home page. SRMA is a short read micro re-aligner for next-generation high throughput sequencing data. Sequence alignment algorithms examine each read independently. When indels occur towards the ends of reads, the alignment can lead to false SNPs as well as improperly placed...


Platforms: Mac

License: Freeware Size: 706.56 KB Download (19): SRMA Download

Added: June 28, 2013 | Visits: 322

dnaTools Xplorer dnaLIMS is a state-of-the art web based laboratory information management system used to track and manage core facility workflow in high throughput environments. Its database and process flow can be customized to your core facility requirements. dnaLIMS process flow is used to capture DNA...


Platforms: Mac

License: Freeware Size: 3.16 MB Download (16): dnaTools Xplorer Download

Added: September 18, 2013 | Visits: 179

OSLay The whole genome shotgun approach to genome sequencing results in a collection of contigs that must be ordered and oriented to facilitate efficient gap-closure. We present a new tool OSLay that uses synteny between matching sequences in a target assembly and a reference assembly to layout the...


Platforms: Mac

License: Freeware Size: 2.62 MB Download (16): OSLay Download

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