Sequencing

CB-Commander is a plugin based tool that tries to integrate high throughput sequencing algorithms. It allows researchers to design and execute their experiments through a user friendly interface. Platforms: *nix

cutadapt is used to remove adapter sequences from high-throughput sequencing data. This is usually necessary when the read length of the sequencing machine is longer than the molecule that is sequenced, for example when sequencing microRNAs. News March 16, 2011: cutadapt v0.9.3 has been... Platforms: *nix

A multi-stream Pipelines utility which allows you to modify the contents of a text file or files, quickly and easily. You can specify that only certain sections of a file are to be changed; you can confine those changes to a column, word or field range, translate words and phrases, discard or... Platforms: Windows

Binary fills your screen with scrolling 1s and 0s, with a font and speed of your choice. Binary also supports DNA sequencing, which scrolls C/G/A/T instead of 1 and 0. Make sure to use a fixed-width font like Courier New, or it will look really bad. A great font to use with Binary is SF Digital... Platforms: Windows

Guido van Robot, or GvR for short, is a minimalistic programming language that provides just enough syntax to help students learn the concepts of sequencing, conditional branching, looping, and procedural abstraction. Guido van Robot's biggest strength is that it permits this learning in an... Platforms: *nix

MassSpec::CUtilities is a Perl extension containing C utilities for use in mass spectrometry. SYNOPSIS MassSpec::CUtilities is an XS module so theres a chance that you or your target user might not get it to install cleanly on the target system; therefore its recommended to make its presence... Platforms: *nix

FreeWheeling is an audio tool for live looping. It provides a highly configurable, fluid user interface for instrumentalists to capture loops in real-time. Based on the JACK, ALSA, and SDL libraries, it integrates with FluidSynth, a software synthesizer. Freewheeling empowers the trance of... Platforms: *nix

Rosegarden project is a professional audio and MIDI sequencer, score editor, and general-purpose music composition and editing environment. Rosegarden is an easy-to-learn, attractive application that runs on Linux, ideal for composers, musicians, music students, and small studio or home... Platforms: *nix

AVdrum is an audio video step sequencer and drum machine. You have the ability to switch audio or video of a movie clip On/ Off in realtime to compose AV sequences. This truly innovative software takes the concept of step sequencing to the next level.Main Features: Sequence AV clips using On/Off... Platforms: Mac

OSXRecording.com web site is a community of professional audio producers and engineers using OS X. This widget brings you the RSS data feed of the latest news, product announcements, pod cast releases, contest information and more in a small, simple, easy to install tool. Platforms: Mac

KinTool is a tool that allows the sound to move in a multiphonic sonoric space. 12 channels Sequencer to write spatial events. Spatial events can be triggered randomly. Screen to visualize spatial movements The sound source can be reproduced by: External source: Rewire (Live, Reason ...)... Platforms: Mac

Fable is a framework specially designed for automating beamline experiments for materials science. This framework will make TotalCryst experiments easy and efficient. It has been developed for doing grain mapping experiments in materials science at a synchrotron but could be applied to other... Platforms: Windows

PGDSpider was built using the Java programming language as a conversion app for population genetics and genomics programs. The software facilitates the data exchange possibilities between programs for a vast range of data types (e.g. DNA, RNA, NGS, microsatellite, SNP, RFLP, AFLP, multi-allelic... Platforms: Windows

Mascot Distiller uses a unique algorithm, which fits each peak to a calculated isotope distribution, processes the raw data into high quality, de-isotoped peak lists. This core functionality can be extended by adding one or more toolboxes. These are optional collections of tools for specific... Platforms: Windows, Windows Vista, 7

inGAP is a handy, easy to use application specially designed to offer you an integrative next-generation genome analysis pipeline, which employed a Bayesian principle to detect single nucleotide polymorphisms (SNPs), small insertion/deletions (indels). inGAP has been applied to a number of genome... Platforms: Windows

SpliceGrapher predicts alternative splicing patterns and produces splice graphs that capture in a single structure the ways a gene's exons may be assembled. It enhances gene models using evidence from next-generation sequencing and EST alignments. FEATURES: · splice graph prediction ·... Platforms: Windows

Olorin is an interactive filtering utility built using the Java programming language. The program can be used for next generation sequencing data coming from the study of large complex disease pedigrees. Olorin, is a tool which integrates gene flow output from Merlin and next generation... Platforms: Windows

HapEdit is an instrument that's been specially built in order to help the user assess the accuracy of haplotype assembly. This is done using the next-generation sequencing technologies. HapEdit is a tool that was created with the help of the Java programming language and can run on multiple... Platforms: Windows

What if you could play your sequencer the way you play your synth? Well now you can with Spectrum 2. Spectrum is a performance sequencer with instant control over every musical aspect of your track, providing a higher level of interaction that inspires new ways of writing and remixing your songs.... Platforms: Mac

This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are: - Assembly of DNA sequencing data - Graphically and... Platforms: Mac