Dna Sequence Assembly
A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.
Platforms: Mac
License: Freeware | Size: 4.11 MB | Download (67): Staden Package Download |
ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data.
The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular...
Platforms: Windows
License: Freeware | Download (425): ABySS-Explorer Download |
LIGR Assembler is a sequence assembly program. It was derived from TIGR Assembler and addresses some of TIGR Assembler's shortcomings.
Platforms: *nix
License: Freeware | Size: 3.43 MB | Download (35): LIGR Assembler Download |
This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.
Some analyses are:
- Assembly of DNA sequencing data
- Graphically and...
Platforms: Mac
License: Freeware | Size: 52.6 MB | Download (58): CLC DNA Workbench for Mac OS Download |
DNA Replicator is a graphical tool (written in java) that compute the complementary sequence from an input DNA sequence. It's a really easy used application.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 9.94 KB | Download (44): DNA Replicator Download |
Lucy is a program for DNA sequence quality trimming and vector removal. Its purpose is to process DNA sequence data acquired from DNA sequencers to prepare the data for downstream processing applications such as genome assembly.
Platforms: *nix
License: Freeware | Size: 1.38 MB | Download (33): Lucy For Linux Download |
MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.
Platforms: *nix
License: Freeware | Size: 51.2 KB | Download (33): MUMmerGPU Download |
4Peaks is a program that helps molecular biologists to visualize and edit their DNA sequence files. At last there is a decent solution for analyzing trace files on the Mac OS X platform, taking another step away from slow and non-native programs from the Mac OS 9 period. Also, 4Peaks supports...
Platforms: Mac
License: Freeware | Download (124): 4Peaks Download |
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
Platforms: Windows, Mac, Linux
License: Freeware | Size: 377.64 KB | Download (43): DIY Genomics Download |
A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.
Platforms: Mac
License: Freeware | Size: 40.96 KB | Download (48): Primer Design Tool Download |
The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...
Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64
License: Freeware | Download (466): FastPCR Professional Download |
Have you ever needed to generate easy to read Quality Reports for your DNA sequencing? Have you ever needed to sort your DNA trace files by quality? Have you ever needed to change the comments tag in your Chromatograms? If so, this software suite is for you.
This bundle includes: Mac Sequence...
Platforms: Mac
License: Freeware | Size: 2.8 MB | Download (58): Mac Sequence View for Mac OS Download |
Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis.
CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...
Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64
License: Freeware | Download (445): CLC Main Workbench Download |
HapEdit is an instrument that's been specially built in order to help the user assess the accuracy of haplotype assembly. This is done using the next-generation sequencing technologies.
HapEdit is a tool that was created with the help of the Java programming language and can run on multiple...
Platforms: Windows
License: Freeware | Download (417): HapEdit Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Mac
License: Freeware | Size: 3.7 MB | Download (600): GENtle for Mac OS X Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Linux
License: Freeware | Size: 1.7 MB | Download (529): GENtle for Linux Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Windows
License: Freeware | Size: 2.7 MB | Download (512): GENtle for Windows Download |
iMethy is a handy, easy to use genome-wide DNA methylation analysis and visualization application based on next generation sequencing.
Firstly, it holds the command-line pipeline to align the bisulfite-treated short read, identify the methylcytosine at CG/CHG/CHH sites, detect the methylation...
Platforms: Windows
License: Freeware | Download (458): iMethy Download |
Oligomer is a small, simple, Java based application specially designed to help you perform sequence analysis with standard and mixed bases.
This tool will also help you find out the physical properties of the sequence, so that you get a complete bio-informatics software.
for WindowsAll
Platforms: Windows
License: Freeware | Download (382): Oligomer Download |
Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation.
Artemis is written in Java, and is available for UNIX, Macintosh and...
Platforms: Windows, Mac, Linux, Java
License: Freeware | Size: 10 MB | Download (452): Artemis Download |