Dna Sequence Assembly

Assembly Analyzer allows the user to view the resources and metadata contained within .NET assemblies. It also contains a disassembler that displays source code for methods and dependencies, including call graphs. The latest stable build includes both a ClickOnce installer and a .zip file... Platforms: Windows

CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. Bioinformatics features in CLC Sequence Viewer Multiple alignment of DNA, RNA, and... Platforms: Windows

The fastest way to remove duplicates from a sequence depends on some pretty subtle properties of the sequence elements, such as whether they're hashable, and whether they support full comparisons. This script defines the unique() function that tries three methods, from fastest to slowest,... Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script contains a function that given a sequence and a number n as parameters, returns the th permutation of the sequence (always as a list). Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script allows you to split up a sequence in same-size (if possible) parts. Platforms: Windows, Mac, *nix, Python, BSD Solaris

Getting min/max in a sequence script allows you to find the min/max value in a sequence as compared to a reference. Platforms: Windows, Mac, *nix, Python, BSD Solaris

This function provides farey sequence, F(n), for any integer n.There's probably a more elegant solution out there, but I couldn't find it. Note: it doesn't prepend (0,1) and append (1,1)... Platforms: Windows, Mac, *nix, Python, BSD Solaris

JBoss DNA is a repository and set of tools that make it easy to capture, version, analyze, and understand the fundamental building blocks of information.As models, service and process definitions, schemas, source code, and other artifacts are added to the repository, JBoss DNA "sequences" the... Platforms: Java

It will ask for input the bit stream then generate pseudorandom bit sequence, finally give output as direct sequence spread spectrum..... Platforms: Matlab

Euler Angles To Quaternion Conversion for six basic sequence of rotations around X(Roll),Y(Pitch) and Z(Yaw) axis.Allowed Sequences: xyz, xzy, yxz, yzx, zxy, zyx. Platforms: Matlab

alculate the normalized partial energy sequence (NPES) for a given signal vector X.If a particular transform is capable of capturing the key features of a signal in few coefficients, the NPES will approach unity for relatively quickly.Ref: Percival and Walden, Wavelet Methods for Time Series... Platforms: Matlab

The PRBS are based on 3 to 9 bits memory delays and put out 2^3 -1 to 2^9 -1 binary sequence length. Usage: these generators can be used in process identification as noise source on command signal Platforms: Matlab

SeqTEx: identification of average Next-Generation Sequence DNA length from cross-correlation This project is in development and will be submitting the manuscript soon. Check back for more information about using this program later. Platforms: Mac

Bio2Midi converts the text of a DNA or protein sequence to a MIDI file, which you may immediately audition, or import into any MIDI sequencer for further compositional processing. Choose to listen to the sequences as 4-note DNA bases, or as 20-note protein amino acids, or both at once. You can... Platforms: Windows

Simple Document Assembly is a moderately successful attempt to provide the legal profession, and others having the need to fill in forms, with a simple strategy to automate the insertion of information into precedents (templates). It inserts all information into the template in one pass through... Platforms: Windows

The Assembly Language Debugger is a tool for debugging executable programs at the assembly level. It currently runs only on Intel x86 platforms. Platforms: Windows, Mac, *nix, C/C++, BSD Solaris

Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =... Platforms: *nix

JMotifFinder is a small, simple, easy to use application designed to offer users a graphical utility to find DNA Motifs such as Primers in huge EMBL Files. If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and... Platforms: Windows

Primer Design is a simple utility created in order to design DNA primers for mutagenesis in the BGME lab (JHU). It allows users to select or enter background sequence and add current and new mutations. During the design process, users are presented with various updating checks to guide them. Platforms: Windows

An automatically-updating library of genomic and genetic data; that provides a fully integrated, visually-advanced toolset for - Sequence alignment and phylogenetics - Sequence analysis, Contig assembly, - primers, restriction analysis - BLAST. Protein structure viewing, NCBI, UniProt, Pubmed... Platforms: Mac