Dna Sequence Assembly
A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence...
Platforms: Mac
License: Freeware | Size: 18.6 MB | Download (52): Serial Cloner for Mac OS Download |
Wild-DNA Slide Show: simple picture slide show using pixel shaders 2.0 to display your pictures with cool effects.
Platforms: Windows
License: Freeware | Size: 1.75 MB | Download (51): Wild-DNA Slide Show Download |
Wild-DNA PortaLaunch: simple popup menu hidden in a systray icon to launch portable apps. In xml customization for the popup menu, and can launch applications without full path. Icons in menu can be used from libraries (exe, dll...) or bitmaps (png, jpg...)
Platforms: Windows, Other
License: Freeware | Size: 1.16 MB | Download (412): Wild-DNA PortaLaunch Download |
Serial terminal in assembly x86 language that works without operational systems, suport ANSI and can be used on a laptop or notebook to easily and quickly configure routers, switches and other devices that uses serial comm ports
Platforms: Windows, Mac, Linux
License: Freeware | Size: 11.9 KB | Download (45): AAST: Assembly ANSI Serial Terminal Download |
DNA is an open, flexible and extensible deep network analyzer software server and software architecture for gathering and analyzing network packets, network sessions and applications protocols, passively off enterprise class networks.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 12.06 MB | Download (50): Deep Network Analyzer (DNA) Download |
FSA is a probabilistic multiple sequence alignment algorithm which uses a 'distance-based' approach to aligning homologous protein, RNA or DNA sequences.
Platforms: Mac, BSD, Linux
License: Freeware | Size: 9.61 MB | Download (53): FSA Download |
ICRPfinder finds or generates DNA patterns which can include restriction enzyme recognition sites in coding sequences without changing the translated protein sequence.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 91.95 KB | Download (52): ICRPfinder Download |
POSA (Perl Objects for Sequence Analysis) provides an easy-to-use perl interface to handling raw ABI sequence trace files. For example: fasta can be extracted, sequence contigs can be build and putative SNPs and SBE primers can be easily generated.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 3.65 MB | Download (45): Perl Objects for Sequence Analysis Download |
A fast and reliable tool, written in Java 5, for generating professional UML sequence diagrams from text. Supports actors, con-/destructors, threads, broadcasts, notes, and fragments. Can serve as a Javadoc taglet. Exports PDF, (E)PS, SVG, PNG, ...
Platforms: Windows, Mac, Linux
License: Freeware | Size: 2.33 MB | Download (56): Quick Sequence Diagram Editor Download |
TaxonDNA is a simple but extensible system for performing simple DNA (and other) sequence manipulations in Java. We hope to create a simple framework which can be quickly extended to create bioinformatics applications.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 380.94 KB | Download (58): TaxonDNA Download |
Permutations and combinations are often required in algorithms that do a complete search of the solution space. They are typically rather large so it's best not to compute them entirely but better to lazily generate them.This script uses Python generators to create appropriate generator objects,...
Platforms: Windows, Mac, *nix, Python, BSD Solaris
License: Freeware | Download (55): Generator for sequence operations Download |
Generators, introduced in Python 2.2, can be used to work with infinite sets. This script is a simple example of a generator that creates the Fibonacci sequence.Running this produces the following result:c:python22>python fib.py1 1 2 3 5 8 13 21 34
Platforms: Windows, Mac, *nix, Python, BSD Solaris
License: Freeware | Download (58): Fibonacci sequence using generators Download |
In one type of gene expression analysis, fluorescently tagged messenger RNA from different cells are hybridized to a microscopic array of thousands of complimentary DNA spots that correspond to different genes. Illuminated spots emit different color light, indicating which genes are expressed...
Platforms: Matlab
License: Freeware | Size: 4.35 MB | Download (46): DNA MicroArray Image Processing Case Study Download |
Maximum length sequence assuming distinctvalues = baseVal^powerVal-1 [ms]=mseqSearch(powerVal,baseVal) OUTPUT: ms: generated maximum length sequence, of length basisVal^powerVal-1 such that all values occur with equal frequency=basisVal except zero, which occurs basisVal-1 times INPUT: baseVal:...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (48): m-sequence generation program using a search algorithm Download |
NCBI has an implementation of BLAST algorithm on their website at www.ncbi.nlm.nih.gov/BLAST, which is good if you want to query short DNA or protein sequence against various sequence databases. The problem arises when large sequences need to be BLAST'ed against a sequence database or against...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (45): GUI for Basic Local Alignment Search Tool (BLAST) Download |
Sequence Generator (file ID #24620) has been renamed to CORE - Constraint Randomization Environment. Interface and code structure of v0.91 are explained in this manual.Current development concentrates on these topics:- Performance related issues- Bug fixes (3 known issues)- Improved constraint...
Platforms: Matlab
License: Freeware | Size: 614.4 KB | Download (44): Sequence Generator / CORE Manual (v0.91) Download |
Explore stretching just a single strand of DNA using optical tweezers or fluid flow. Experiment with the forces involved and measure the relationship between the stretched DNA length and the force required to keep it stretched. Is DNA more like a rope or like a spring?
Platforms: Mac
License: Freeware | Size: 1.47 MB | Download (35): Stretching DNA Download |
JMotifFinder is a small graphical utility I wrote to quickly find DNA Motifs such as Primers in huge EMBL Files. If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and mRNA within the source sequence. You can...
Platforms: Mac
License: Freeware | Size: 3.19 MB | Download (36): Motif Finder Download |
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
Platforms: *nix
License: Freeware | Size: 9.61 MB | Download (39): FSA For Linux Download |
BioFace is simple software for editing and analyzing DNA, RNA, and protein sequences that is written in Java using SWT and JFace as libraries. Opening GenBank, FASTA, EMBL, or simple sequence files and analizing these sequences can be done.
Platforms: *nix
License: Freeware | Size: 5.56 MB | Download (42): BioFace For Linux Download |