Diploid Genome Sequence

The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...

Oligomer is a small, simple, Java based application specially designed to help you perform sequence analysis with standard and mixed bases. This tool will also help you find out the physical properties of the sequence, so that you get a complete bio-informatics software. for WindowsAll

inGAP is a handy, easy to use application specially designed to offer you an integrative next-generation genome analysis pipeline, which employed a Bayesian principle to detect single nucleotide polymorphisms (SNPs), small insertion/deletions (indels). inGAP has been applied to a number of genome...


Platforms: Windows

ClaMS is a handy application specially designed to offer you a sequence composition-based classifier for metagenomic sequences. ClaMS works by capturing signatures of each sequence based on the sequence composition. Each sequence is modeled as a walk in a de Bruijn graph with underlying Markov...


Platforms: Windows

tagcna was specially designed using R in order to identify significant consensus events from copy number alterations in cancer genome. Now you can easily identify the events that interest you with the help of this handy and accessible tool.


Platforms: Windows

Jnomics is a collection of cloud-scale DNA sequence analysis tools


Platforms: Mac

Genovar is a stand-alone software built using the Java programming language in order to detect unknown genomic variants. The program can also analyze SNP-related copy number variant regions, and comprehensively visualize genomic data such as array CGH and sequence alignments results.


Platforms: Windows

ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular...


Platforms: Windows

Gendraw was specially developed to aid you in drawing genome graphs. It has multiple graphic elements to represent different types of contents. The contents for drawing can be imported from a standard Genbank or EMBL flatfile, or manually given by the user.


Platforms: Windows

ApneaStaticTrainer is a small, easy to use, handy application specially designed to help you create breath hold sequence for free diving trainings. Basically this tool will help you build O2 and CO2 tables for apnea trainnig and save them as MP3 files. So, if you were looking for a program...


Platforms: Windows

AA seriesA ofA programsA designedA forA accurateA andA highA speedA alignmentA ofA shortA readsA toA referenceA genomes.A NovelA featuresA includeA theA useA ofA baseA qualitiesA inA theA readsA andA ambiguousA nucleotideA codesA inA theA referenceA sequencesA forA alignment. KeyA features: -...


Platforms: Mac

A powerful and user-friendly graphical software designed to conduct large scale exploration of biological sequence databanks and related information (functional, taxonomy, pathways, mutations, etc). KoriBlast can be used for a wide range of applications in genomics and proteomics, such as: full...


Platforms: Mac

KeyPressList is a simple, easy to use tool designed to emulate pressing a sequence of keys to the foreground window. Each line from input file represents a key combination such as ALT-TAB or CONTROL-SHIFT-A or ...each key has a programmable pre-press delay.


Platforms: Windows

MaintainJ, an Eclipse plug-in, generates runtime UML sequence and class diagrams for a given use case, helping the users to quickly understand a complex Java or J2EE application. MaintainJ is the tool to turn to when : --Find out what exactly happens when you run a use case --Generate...


Platforms: Windows, Mac, Java, Linux, Unix

LSC Editor is designed to be a graphical editor and code generator for Live Sequence Charts (LSCs). The code generated follows a simple execution mechanism. It shows a possible execution path. for WindowsAll


Platforms: Windows

Msc-generator is an easy to use, simple tool designed to enable you to draw Message Sequence Charts for telecommunication applications from textual description. Message Sequence Charts (MSCs) are a way of representing entities and message interactions over some time period and are often used in...


Platforms: Windows, XP, Windows Vista, 7

Mallard is a handy, Java based application based on the Pintail algorithm designed to work by comparing evolutionary distances between a query and subject sequence over the length of the 16S rRNA gene (small subunit rRNA), by employing a sampling window of specified size, progressing a fixed...


Platforms: Windows

In this game you will be presented with a sequence of random objects and you need to memorise them and then repeat the sequence. The number of objects will increase as the level increases. If you picked up the wrong object, then the game is over.


Platforms: Windows

BACContigEditor is a simple sequence alignment editing tool, written in Java. It is originally developed for finishing BAC shotgun sequencing projects, but the program could be easily extended to the whole genome project.


Platforms: Windows, Mac, Linux

BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.


Platforms: Mac