Diploid Genome Sequence
Number Generator v1.6 is the tool for generating numbers of 10 digits like a format (ie. 991-991-4756). it has capabilities of generating numbers in sequence or in random with in the given limit.It is very efficient tool for generating mobile numbers. it can generate mobile numbers in random...
Platforms: Windows
License: Shareware | Cost: $24.95 USD | Size: 804.65 KB | Download (284): Number Generator Download |
App::Session can represents a sequence of multiple events perhaps executed in separate processes. SYNOPSIS # ... official way to get a Session object ... use App; $session = App->context(); $context = $session->session(); # get the session # any of the following named parameters may be...
Platforms: *nix
License: Freeware | Size: 73.73 KB | Download (96): App::Session Download |
Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db...
Platforms: *nix
License: Freeware | Size: 82.94 KB | Download (101): Bio::Tools::Run::PiseApplication::fasta Download |
The STed is the high-performance MIDI sequence editor / Music composer system. It had been working on X680x0 old Japanese personal workstation. The STed was originally developed by Mr. Takayuki "TURBO" Toda. Through many volunteers good office the source code of the STed has been opened. Since...
Platforms: *nix
License: Freeware | Size: 532.48 KB | Download (116): STed Download |
AlignAid is a Perl module that easily run sequence alignments locally or on a cluster. SYNOPSIS use AlignAid; # create an AlignAid object # a single, locally run blast job is the default my $job = AlignAid->new( db => my_blast_db, dir => $dir, fasta => my_query.fa, prog_args => V=20...
Platforms: *nix
License: Freeware | Size: 348.16 KB | Download (96): AlignAid Download |
Bio::Seq is a sequence object, with features. SYNOPSIS # This is the main sequence object in Bioperl # gets a sequence from a file $seqio = Bio::SeqIO->new( -format => embl , -file => myfile.dat); $seqobj = $seqio->next_seq(); # SeqIO can both read and write sequences; see Bio::SeqIO #...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (98): Bio::Seq Download |
PM2V is a library for parallel encoding of a video sequence in MPEG II. PM2V is a project developed by students of the Ecole Nationale Supérieure dElectronique et de Radioelectronique de Bordeaux. ENSERB is a high national school of engineering based in Bordeaux (France). It has three...
Platforms: *nix
License: Freeware | Size: 184.32 KB | Download (100): pm2v build Download |
Bio::AlignIO::bl2seq is a bl2seq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class, as in: use Bio::AlignIO; $in = Bio::AlignIO->new(-file => "inputfilename" , -format => bl2seq); $aln = $in->next_aln(); This object can create...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (129): Bio::AlignIO::bl2seq Download |
Bio::AlignIO::msf is a Perl module with msf sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class. This object can transform Bio::Align::AlignI objects to and from msf flat file databases. The rest of the documentation details each of...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (96): Bio::AlignIO::msf Download |
Bio::SeqIO::fastq is a fastq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::SeqIO class. This object can transform Bio::Seq and Bio::Seq::SeqWithQuality objects to and from fastq flat file databases. Fastq is a file format used frequently at...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (110): Bio::SeqIO::fastq Download |
Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =...
Platforms: *nix
License: Freeware | Size: 10.24 KB | Download (105): Algorithm::NeedlemanWunsch Download |
Gene Inspector is a unique combination of a versatile electronic laboratory research notebook and a comprehensive sequence analysis product. Using GI, the user has the ability to define an entire 'suite of analyses' that can be performed each time they (or anyone in the lab) has a new sequence,...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Download (102): Gene Inspector Download |
Sequencher is the industry standard software for DNA sequence analysis. It works with all automated sequencers and is widely known for its lightning-fast contig assembly, short learning curve, user-friendly editing tools, and superb technical support. First released almost 15 years ago,...
Platforms: Mac
License: Demo | Cost: $0.00 USD | Size: 15.7 MB | Download (233): Sequencher Download |
SQLUtilities extends the T-SQL scripting environment by adding 64 new general-purpose functions for text, date/time and numeric processing that can be used directly within queries and stored procedures at the database layer.
Date and time functions include table-valued sequence generator...
Platforms: Windows
License: Shareware | Cost: $199.00 USD | Size: 522 KB | Download (87): SQLUtilities Download |
SeqEntropy was designed as an accessible, easy-to-use and handy assessment instrument of sequence repeats for short read sequencing.
Now you can access and make use of this useful tool directly from the Command Line Interface found in your system.
Platforms: Windows
License: Freeware | Download (465): SeqEntropy Download |
ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence.
This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll
Platforms: Windows
License: Freeware | Download (400): ProtAnnot Download |
jContigSort is is an useful Java-based instrument that was designed in order to help you sort genome contigs.
Alignment of the assembled sequences to a reference genome is a common way to obtain a likely order for the contigs, though most of times the final decision is taken by the user.
Platforms: Windows
License: Freeware | Download (416): jContigSort Download |
The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution.
GPS is a Java software, so it runs on multiple platforms,...
Platforms: Windows
License: Freeware | Download (430): GPS Download |
GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard...
Platforms: Windows
License: Freeware | Size: 2.8 MB | Download (441): GenomeView Download |
iMethy is a handy, easy to use genome-wide DNA methylation analysis and visualization application based on next generation sequencing.
Firstly, it holds the command-line pipeline to align the bisulfite-treated short read, identify the methylcytosine at CG/CHG/CHH sites, detect the methylation...
Platforms: Windows
License: Freeware | Download (458): iMethy Download |