Diploid Genome Sequence

A fast and reliable tool, written in Java 5, for generating professional UML sequence diagrams from text. Supports actors, con-/destructors, threads, broadcasts, notes, and fragments. Can serve as a Javadoc taglet. Exports PDF, (E)PS, SVG, PNG, ... Platforms: Windows, Mac, Linux

Permutations and combinations are often required in algorithms that do a complete search of the solution space. They are typically rather large so it's best not to compute them entirely but better to lazily generate them.This script uses Python generators to create appropriate generator objects,... Platforms: Windows, Mac, *nix, Python, BSD Solaris

Generators, introduced in Python 2.2, can be used to work with infinite sets. This script is a simple example of a generator that creates the Fibonacci sequence.Running this produces the following result:c:python22>python fib.py1 1 2 3 5 8 13 21 34 Platforms: Windows, Mac, *nix, Python, BSD Solaris

Maximum length sequence assuming distinctvalues = baseVal^powerVal-1 [ms]=mseqSearch(powerVal,baseVal) OUTPUT: ms: generated maximum length sequence, of length basisVal^powerVal-1 such that all values occur with equal frequency=basisVal except zero, which occurs basisVal-1 times INPUT: baseVal:... Platforms: Matlab

There are many techniques used to deal with the problem of high PAPR in OFDM systems. An effective one is the Partial Transmit Sequence. It is simulated for QPSK modulated 64-subband OFDM system.Moreover, a .mat file of 100000 such OFDM symbols is available. Platforms: Matlab

This routine shows the surprising behaviour of a random Fibonacci sequence.As reported by Divakar Viswanath - "RANDOM FIBONACCI SEQUENCES AND THE NUMBER 1:13198824..." - in MATHEMATICS OF COMPUTATION, 1999; 69(231): 1131-1155:"For the familiar Fibonacci sequence (defined by f1 = f2 = 1, and fn =... Platforms: Matlab

The Kautz sequence is of the same family of sequences as the de Bruijn sequence, but has an additional requirement that it not contain any consecutive repeats of the same character.The sequence is, by nature, circular, so the final members of pairs (or triplets, quadruplets, etc...) are found... Platforms: Matlab

This function will compute an example of an interleaved pseudo-random de Bruijn sequence, a member of the larger class of M-sequences. The sequence will contain an equal number of each character and subsequence of characters. The sequence is, by nature, circular, so the final members of pairs (or... Platforms: Matlab

A research fellow at Harvard asked me to write a program to search for gene sequence, such as d-de?TCCd-deOao, and record the next 4 codes. The data file was 14Gb. He tried some matlab codes, and the system froze, or kept running and never stopped.I first tested using a loop method (V1.0). It... Platforms: Matlab

Sequence Generator (file ID #24620) has been renamed to CORE - Constraint Randomization Environment. Interface and code structure of v0.91 are explained in this manual.Current development concentrates on these topics:- Performance related issues- Bug fixes (3 known issues)- Improved constraint... Platforms: Matlab

Often I see students asking for help on a tool to compute the Fibonacci numbers. Or, I'll find them asking for help on a Project Euler problem. Or, a student has been assigned the problem of computing the fibonacci numbers using a recursive implementation. After all, these numbers lend themselves... Platforms: Matlab

Set of 3 functions to generate a movie sequence: CamSeqUpdate, CamSeqGen, and CamSeqPlay.From a 3D scene in the current windows, the user specifies a series of views by moving the camera with the camera toolbox (CamSeqUpdate). The list of views are then used to generate a continuous sequence by... Platforms: Matlab

Welcome to the SRMA home page. SRMA is a short read micro re-aligner for next-generation high throughput sequencing data. Sequence alignment algorithms examine each read independently. When indels occur towards the ends of reads, the alignment can lead to false SNPs as well as improperly placed... Platforms: Mac

In this game you will be shown sequences of numbers and each time you will be given a few seconds the remember the sequence. After the time is over you need to repeat that sequence. You lost if you any of the numbers is wrong. Platforms: Mac

The objective of this game is to memorize an image and then reproduce it by clicking in proper sequence. At the start of each level, numbers or letters are revealed inside a grid briefly and then covered up. The player must then click them in sequence from small to large to proceed to the next... Platforms: Mac

This page describes a freely downloadable color sequence editor called CIEluv_CSE. It is optimized to create "spiral color sequences" (Ware, 1988). Read on to find out what a spiral color sequence is and why it is a good idea. Pseudo-color sequences are sequences of colors used to visually code... Platforms: Mac

bedtools: a flexible suite of utilities for comparing genomic features. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.... Platforms: Mac

Lucy is a program for DNA sequence quality trimming and vector removal. Its purpose is to process DNA sequence data acquired from DNA sequencers to prepare the data for downstream processing applications such as genome assembly. Platforms: *nix

True to its name this phone number generator software generates numbers in random with aplomb. But this Random number generator is equally adept at generating numbers in sequence and doubles as an efficient sequential number generator. Tool allows the user to generate millions of random or... Platforms: Windows

MaintainJ, an Eclipse plug-in, generates runtime UML sequence and class diagrams for a given use case, helping the users to quickly understand a complex Java or J2EE application. MaintainJ logs runtime method call trace to a file and uses that trace file to render sequence and class... Platforms: Java