OligoCounter 0.64

Company: Colin Davenport

Date Added: August 03, 2013 | Visits: 378

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OligoCounter is a Java command line program which counts overrepresented 8-14bp oligonucleotides in DNA sequences. These oligos can be useful in visualising small genomes on a global basis (see figure below), investigating repeats at certain regions, and for attributing short reads (for example from metagenomics) to a sequenced genome.<br /><br />Simple text output is produced which can be visualised with a suite of associated Java applications, for example JCircleGraph or OligoViz.

Requirements: No special requirements

Platforms: Mac, Mac OSX

Keyword: And For, Applications, At Certain, Attributing Short, Basis, Be Useful, Can Be, Command Line, Counts Overrepresented, Genomesimple Te, Global Basis, Investigating, Java, Oligonucleotides, Oligos, Regions, Short Reads, Visualised, Visualising Small Genomes

Users rating: 0/10

License: Freeware

Size: 1.18 MB

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