ClustalW Interface 1.0

Date Added: April 17, 2013 | Visits: 169

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There tools are intended for use with the stand-alone version of the ClustalW application. The application is available for free download here:ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalW/Documentation for ClustalW is available here:http://www.infobiogen.fr/doc/ClustalW/clustalw_help.htmlTools included are:CLUSTALWGUI - simple GUI for alignment tasks@CLUSTALWCMD - class used to store parameters to pass to ClustalWCALL_CLUSTALW - function that passes the parameters from a @CLUSTALWCMD object to the ClustalW applicationCLUSTALALIGNREAD - file for importing the ClustalW formatted alignment file, produced by ClustalW.Instructions:Extract the files to a directory on your MATLAB path. You will also need to place the ClustalW application file in a directory on your system's PATH.An example alignment file (example.aln) is included for use with CLUSTALWGUI. Follow the steps below, to align the example sequences, using the default options.1) Open the file from CLUSTALWGUI's File menu.2) Select a location for the output alignment file. For example, 'aligned.aln'.3) Press the 'ClustalW!' button.The output from the ClustalW will be displayed to the screen. You can then use CLUSTALALIGNREAD to import the sequences as a structure, including the consensus line:s = clustalalignread('aligned.aln')

Requirements: No special requirements

Platforms: Matlab

Keyword: Align, Clustalwgui, Default, Examplealn, Follow, Import, Including, Location, Menu, Options, Pathan, Select, Sequences, Steps, Structure, System

Users rating: 0/10

License: Shareware

Size: 20.48 KB

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