Sequencing

PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR) and sequencing. It aims to automate and simplify the process of primer design.PerlPrimer's current features include the following: - Calculation of...

This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are: - Assembly of DNA sequencing data - Graphically and...

LutefiskXP is ANSI C compliant software used to perform de novo peptide sequencing from tandem mass spectra.


Platforms: Windows, Mac, Solaris

BeatS is a collection of Hip-Hop, R and B/Pop, Reggaeton, Afro-Pop/Kwaito and Christmas BeatS All-In-One. ALSO CHECK OUT the Full Version of BeatS AI1. BeatS was put together by extraordinary people with vast music industry experience who have a great appreciation for music and pay attention to...


Platforms: Mac

SlideViewer is an automatic picture viewer. Just point SlideViewer at directories containing images, and it will sequentially display the images as a slide-show. Convenient controls enable altering the speed, pausing, going-back, as well as sequencing manually.


Platforms: *nix

The Beat Store was put together by extraordinary people, with vast music industry experience, who have a great appreciation for music and pay attention to detail. In addition, these individuals appreciate the need for world-class instrumentals for professional record making hence this app. All...


Platforms: Mac

Woo Shell (wsh) is an alternative to the normal Windows command prompt (cmd.exe). It is inspired by linux shells such as bash, csh and by the xterm terminal. The shell allows execution of commands with pipelining and sequencing. Woo Shell (wsh) is an alternative to the normal Windows command...


Platforms: Windows

Using super-fast, integrated, high-performance computing algorithms, CLC Genomics Workbench sets a new standard for desktop based reference assembly and de novo assembly of SOLiD, Solexa, 454, and Helicos sequencing data# De novo assembly of Sanger, 454, Solexa, Helicos, and SOLiD data -...


Platforms: Mac

Cacti is a complete network graphing solution designed to harness the power of RRDTool's data storage and graphing functionality. Cacti project provides a fast poller, advanced graph templating, multiple data acquisition methods, and user management features out of the box. All of this is...


Platforms: *nix

VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.


Platforms: Windows, Mac, Linux

This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. 'Novel computational methods for increasing PCR primer design effectiveness in directed sequencing'. BMC Bioinformatics 2008, 9:191.


Platforms: Windows, Mac, Linux

BugEye is a unit testing framework that generates native code. It was developed in response to the identified limitations of existing unit testing frameworks. Features: - Anonymous test definitions: You don't have to create a unique name for each test. - Test metadata: Give a test a summary...


Platforms: BSD Solaris

Cacti is a complete frontend to RRDTool, it stores all of the necessary information to create graphs and populate them with data in a MySQL database.The frontend is completely PHP driven. Along with being able to maintain Graphs, Data Sources, and Round Robin Archives in a database, cacti handles...


Platforms: PHP

SSG-Generator (formerly Scheduled Sequencing Graph Generator) is a simple, open-source, academic software written to understand fundamentals of High Level Synthesis of system design.


Platforms: Windows, Mac, Linux

OMS is used for sequencing events on a timeline, allowing control of software and hardware for music, video, and demoscene productions. It is fairly similar to trackers, which are music editors, famous for their use in games and demoscene productions.


Platforms: Windows, Mac, Linux

Welcome to the SRMA home page. SRMA is a short read micro re-aligner for next-generation high throughput sequencing data. Sequence alignment algorithms examine each read independently. When indels occur towards the ends of reads, the alignment can lead to false SNPs as well as improperly placed...


Platforms: Mac

Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.


Platforms: Windows, Mac, Linux

Cacti is a complete frontend to RRDTool, it stores all of the necessary information to create graphs and populate them with data in a MySQL database.The frontend is completely PHP driven. Along with being able to maintain Graphs, Data Sources, and Round Robin Archives in a database, cacti handles...


Platforms: PHP

AnnTools is an efficient, fast and robust bioinformatics tool annotating SNP and CNV calls generated from sequencing and microarray data.


Platforms: Mac, BSD, Linux

Pyrotagger only accepts sequencing reads that have MID sequences (a.k.a barcodes, tags), and all of them must have the same length. When you have no MIDs, or variable-length MIDs, Pyrotagger MID Adjust appends new MIDs or extends existing ones to satisfy Pyrotagger requirements.


Platforms: Windows, Mac, Linux