Primer
Nowadays, the use of so-called RNA interference is a common technique applied by molecular biologists to determine the function of the many genes in our genome.Unfortunately, the design of oligonucleotides, the building blocks for this technique, is a time-consuming and error-prone task. iRNAi...
Platforms: Mac
License: Freeware | Download (94): iRNAi Download |
JMotifFinder is a small, simple, easy to use application designed to offer users a graphical utility to find DNA Motifs such as Primers in huge EMBL Files.
If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and...
Platforms: Windows
License: Freeware | Download (430): JMotifFinder Download |
FONZIE is a bioinformatic tool written in Python developed for the genetic cartography speciality. FONZIE allow as well to find markers on a set of sequences than to find associate oligonucleotides. http://www.biomedcentral.com/1756-0500/3/322/abstra Features . Requirements: Python, Tandem...
Platforms: *nix
License: Freeware | Size: 20.48 KB | Download (48): FONZIE Download |
This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.
Some analyses are:
- Assembly of DNA sequencing data
- Graphically and...
Platforms: Mac
License: Freeware | Size: 52.6 MB | Download (58): CLC DNA Workbench for Mac OS Download |
An automatically-updating library of genomic and genetic data; that provides a fully integrated, visually-advanced toolset for
- Sequence alignment and phylogenetics
- Sequence analysis, Contig assembly,
- primers, restriction analysis
- BLAST. Protein structure viewing, NCBI, UniProt, Pubmed...
Platforms: Mac
License: Freeware | Size: 77 MB | Download (58): Geneious for Mac OS Download |
PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR) and sequencing. It aims to automate and simplify the process of primer design.PerlPrimer's current features include the following: - Calculation of...
Platforms: *nix, Perl, BSD
License: Freeware | Download (58): PerlPrimer Download |
DBMySQL is a mysql class having a 'javadoc-like/lite' layout. Simple in design, this class is meant to be both a usable class as well as a documented primer for those interested in learning php database scripting.It has enough features to do many things you'd want to do with a database class, and...
Platforms: PHP
License: Freeware | Size: 10 KB | Download (43): DBMySQL Download |
Seqlib is a Python module and application package for population genetics (and more). It allows processing, analyzing and simulating biological sequences. It is specifically designed for automated large-scale sequence analysis. Main features: * Fasta-centered input and output, format...
Platforms: Mac
License: Freeware | Size: 2.7 MB | Download (37): SEQLIB Download |
This project provides debugging tools for developers writing applications that run on Google Chrome or its open-source version Chromium or any V8-based application. The tools enable you to debug javascript inside these browsers over the TCP/IP protocol. If you are looking for information on the...
Platforms: Mac
License: Freeware | Size: 1.37 MB | Download (36): ChromeDevTools Download |
The whole genome shotgun approach to genome sequencing results in a collection of contigs that must be ordered and oriented to facilitate efficient gap-closure. We present a new tool OSLay that uses synteny between matching sequences in a target assembly and a reference assembly to layout the...
Platforms: Mac
License: Freeware | Size: 2.62 MB | Download (39): OSLay Download |
JMotifFinder is a small graphical utility I wrote to quickly find DNA Motifs such as Primers in huge EMBL Files. If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and mRNA within the source sequence. You can...
Platforms: Mac
License: Freeware | Size: 3.19 MB | Download (36): Motif Finder Download |
analyzes different features of multiple primers simultaneously, the melting temperature calculation for standard and degenerate oligonucleotides, GC content, primer PCR efficiency; primers are analyzed for all primer secondary structures including G-quadruplexes detection, hairpins, self-dimers...
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (43): PrimersList Download |