Mumbai Dna

In Cryptozookeeper, you attempt to solve puzzles and quests in order to find different kinds of DNA with which to make over 60 possible cryptids. There are over 200 characters total to encounter, and a Creative Commons-licensed soundtrack of 70 songs. A character-driven work with a full text... Platforms: Mac

JDSA is a Java program that will degenerately search DNA sequences. This program searches sequences for multiple nucleotides at a given position (positional degeneracy), limited overall sequence accuracy (group degeneracy) or variable spacing between multiple DNA sequences (spacing degeneracy).... Platforms: Mac

ProteinMusic is a Java program converting DNA sequences into music. The original idea for this project came from R. D. King at the University of Wales, Aberystwyth and C. G Angus from the Shamen (King, R.D. & Angus, C.G. (1996)). Platforms: Mac

BioFace is simple software for editing and analyzing DNA, RNA, and protein sequences that is written in Java using SWT and JFace as libraries. Opening GenBank, FASTA, EMBL, or simple sequence files and analizing these sequences can be done. Platforms: *nix

The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in computational structural biology to facilitate and standardize the development of molecular modeling, design and analysis tools. Platforms: *nix

Lucy is a program for DNA sequence quality trimming and vector removal. Its purpose is to process DNA sequence data acquired from DNA sequencers to prepare the data for downstream processing applications such as genome assembly. Platforms: *nix

Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, this code base was released as open source in 2006 by Celera. Platforms: *nix

ESTScan is a program that can detect coding regions in DNA sequences, even if they are of low quality. ESTScan will also detect and correct sequencing errors that lead to frameshifts. ESTScan is not a gene prediction program , nor is it an open reading frame detector. In fact, its strength lies... Platforms: *nix

MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer. Platforms: *nix

Binary fills your screen with scrolling 1s and 0s, with a font and speed of your choice. Binary also supports DNA sequencing, which scrolls C/G/A/T instead of 1 and 0. Make sure to use a fixed-width font like Courier New, or it will look really bad. A great font to use with Binary is SF Digital... Platforms: Windows

MB Blood Type Inheritance is a blood type determination tool for your child. This is based on the genetic inheritance of a blood type from a parent to a child. Blood Type describes the composition of a personls red blood cells. It is determined by co-dominant alleles. This is one of the forms in... Platforms: Windows

Bio::PrimarySeqI is a Perl Interface definition for a Bio::PrimarySeq. SYNOPSIS # Bio::PrimarySeqI is the interface class for sequences. # If you are a newcomer to bioperl, you should # start with Bio::Seq documentation. This # documentation is mainly for developers using # Bioperl. #... Platforms: *nix

Deep Network Analyzer is an flexible, open and extensible deep network analyzer (software server) and architecture for gathering and analyzing network packets, network sessions and applications protocols, passively off enterprise class networks. DNA is designed to be used for Internet Security,... Platforms: *nix

Aorta project is a load-balancing clustered P2P application. It executes Tasklets (which have the ability to split themselves into sub tasks that can be executed in pararell). A typical cluster contains of a LAN with 1-256 computers, each one running aorta. A Tasklet can be of any type... Platforms: *nix

Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)... Platforms: *nix

Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #... Platforms: *nix

NeoBio project consists of Bioinformatics algorithms in Java. What algorithms? The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment).... Platforms: *nix

Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =... Platforms: *nix

LabAssistant is a scientific program, developed to help you organize your (scientific) experiments instead of using multiple timers, stickies, and a labjournal.Key features of LabAssistant are: Create and manage incubation step for multiple experiments and get a reminder when your experiment has... Platforms: Mac

Nowadays, the use of so-called RNA interference is a common technique applied by molecular biologists to determine the function of the many genes in our genome.Unfortunately, the design of oligonucleotides, the building blocks for this technique, is a time-consuming and error-prone task. iRNAi... Platforms: Mac