Mumbai Dna

For the design of long oligos for DNA microarrays, primer pairs for PCR amplifications, siRNAs, and more. The user interface emphasizes usability and is aimed at assisting researchers for a painless, rapid, automated, and reliable design. - A bug in the export to FASTA and Excel has been fixed. Platforms: Mac

A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence... Platforms: Mac

Ultimate Destination Guide To India Including: Travel Planning About the climate and weather in India Arranging travel documentation Money matters Packing List Coming to India Favorite Destinations Mumbai Kochi (Kerala) Jaipur Ajanta and Ellora Caves Goa Agra All about India (General... Platforms: Windows, Edition 2005

Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25. Platforms: Windows, Mac, Linux

Cleaver is a program for comparing restriction endonuclease digests of orthologous DNA sequences from different taxa. It performs virtual restriction digests and searches for endonucleases that cleave DNA fragments from given taxa but not others. Platforms: Windows, Mac, Linux

DNAGalaxy is an attempt to produce an open-source bioinformatics software alternative to the expensive DNAStar Lasergene software. Its features currently include Blast and Entrez searching, a frontend to clustal and a sequence editor. It requires java1.5 Platforms: Windows, Mac, Linux

FSA is a probabilistic multiple sequence alignment algorithm which uses a 'distance-based' approach to aligning homologous protein, RNA or DNA sequences. Platforms: Mac, BSD, Linux

This program will read in data generated by ABI DNA Analyzers using GeneScan or GeneMapper, CEQ 2000 and SCF instruments and construct gel images which are straightened and sized. Please download and view the tutorial, no documentation is included in 2.1 Platforms: Windows, Mac, Linux

ICRPfinder finds or generates DNA patterns which can include restriction enzyme recognition sites in coding sequences without changing the translated protein sequence. Platforms: Windows, Mac, Linux

MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method. Platforms: Windows, Mac, BSD, Linux

MeltDNA Tool For Prediction of DNA Duplex Hybridization & Melting Thermodynamics(delta G, delta H and delta S ,Tm,Ta Prediction) Platforms: Windows, Mac, Linux

A database to handle voucher specimens of DNA sequences used for molecular phylogenetics. Platforms: Windows, Mac, Linux

ProteinMusic is a Java program converting DNA sequences into music. The original idea for this project came from R. D. King at the University of Wales, Aberystwyth and C. G Angus from the Shamen (King, R.D. & Angus, C.G. (1996)). Platforms: Windows, Mac, BSD, Linux

A web based application to track protein related reagents including DNA constructs, cell lines, supes, and purified proteins. Supports creating, tracking, and prioritizing requests for transfections and DNA. Includes search and PDF reports. Platforms: Windows, Mac, Linux

RAPD Primer Design from Metagenomes (RPD-M) scans metagenome sequences identifying and determining relative frequency of candidate primers for Random Amplification of Polymorphic DNA (RAPD) assays. Platforms: Mac, BSD, Linux

Find restriction enzymes that help differ known homologe DNA sequences (RFLP). Simulate electrophoresis gels. Usefull to investigate the diversity of a population by one of their common genes. Written in perl, uses bioperl modules and the GD library. Platforms: Windows, Mac, Linux

The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT). Platforms: Windows, Mac, Linux

TaxonDNA is a simple but extensible system for performing simple DNA (and other) sequence manipulations in Java. We hope to create a simple framework which can be quickly extended to create bioinformatics applications. Platforms: Windows, Mac, Linux

The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT). Platforms: Windows, Mac, Linux

NCBI has an implementation of BLAST algorithm on their website at www.ncbi.nlm.nih.gov/BLAST, which is good if you want to query short DNA or protein sequence against various sequence databases. The problem arises when large sequences need to be BLAST'ed against a sequence database or against... Platforms: Matlab