Molecular Interaction

grammydotru123 eases interaction with the MP3 portal grammy.ru. It works in this way: you seek up the url of an artist or an album at grammy.ru, and then just invoke grammydotru123 or python grammydotru123 and it fetches all songs belonging to the artist/album (a song of an album of... Platforms: *nix

Etiquette provides an interaction protocol construction tool. Etiquette is an interaction protocol construction toolkit. The projects goal is to build a framework for rapid design of network communication code. Etiquette interaction protocols are intended to describe valid communication... Platforms: *nix

Kojoney project is a low level interaction honeypot that emulates an SSH server. The daemon is written in Python using the Twisted Conch libraries. Kojoney is a mix of the spanish word cojon (s/c/k/) and honey. In the spanish language the sentence "estar hasta los cojones" is used to express... Platforms: *nix

Imager::TimelineDiagram is a Perl extension for creating Timeline Diagrams (designed to show system interaction over time). SYNOPSIS use Imager::TimelineDiagram; use Imager::Font; my $tg = Imager::TimelineDiagram->new( #maxTime => 10, #dataLabelSide => left, labelFont =>... Platforms: *nix

Bio::Network::IO::dip_tab is a Perl class for parsing interaction data in DIP tab-delimited format. SYNOPSIS Do not use this module directly, use Bio::Network::IO. For example: my $io = Bio::Network::IO->new(-format => dip_tab, -file => data.dip); my $network = $io->next_network; The... Platforms: *nix

Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene so that the gene can be directionally inserted into a vector. Solver is generic, restriction enzymes and their order in the vector are specified in the caller. XPORT SUBROUTINES sub find_mc_primers... Platforms: *nix

LAMMPS project is a Molecular Dynamics Simulator. LAMMPS has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grain systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the mesoscale... Platforms: *nix

Test::CPANpm is a Perl module to test a distributions interaction with CPAN before uploading. SYNOPSIS use Test::CPANpm; use Test::More qw(no_plan); cpan_depends_ok( [CGI, Module::Build, Acme::Wabbit], got the right dependancies ); cpan_depends_ok_force_missing(... Platforms: *nix

Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is... Platforms: Windows

BALLView is our standalone molecular modeling and visualization application. Furthermore it is also a framework for developing molecular visualization functionality. It is available free of charge under the GPL for Linux, Windows and MacOS. It provides fast OpenGL-based visualization of... Platforms: Windows

The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution. GPS is a Java software, so it runs on multiple platforms,... Platforms: Windows

PyMOL is a user-sponsored molecular visualization system on an open-source foundation. Please support development of this open, effective, and affordable software by purchasing an incentive copy, which is pre-built and comes with maintenance and support. PyMOL can interpret over 30 different... Platforms: Windows, Mac, Linux

The Ascalaph Designer application was developed for molecular models and simulations. Using this application you can simulate, molecular graphics, optimization, molecular dynamics, quantum chemistry. Features: Molecular graphics Multiple windows Two cameras per model CPK, Wire frame,... Platforms: Windows

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows... Platforms: Windows

MOPlot is a handy visualization application specially designed for fast molecular orbitals plotting from the outputs of the Gaussian 03/98/94, Molcas, Gamess/US quantum chemical calculation packages. This Molecular Orbital Plotting Program will prove to be easy-to-use and very efficient. MOPlot... Platforms: Windows, XP

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows... Platforms: Windows

Molecules and Light is a Java application designed to enable you to observe the interaction of light and molecules. Do you ever wonder how a greenhouse gas affects the climate, or why the ozone layer is important? Now you can find out, with the aid of this application. for WindowsAll Platforms: Windows

Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is... Platforms: Mac

Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is... Platforms: Windows

Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is... Platforms: Linux