Mitochondrial Dna Evolution

CEIConvert provides an email conversion program for kMail, Netscape, Evolution, and Eudora. This tool will convert your individual emlx mail files (found in ~/Library/Mail/) to the old mbox format, used by almost every UNIX/Linux mail client and recognized by many more. Basically, it helps...

The DNA Molar Converter widget is a Dashboard widget that allows to perform molar conversions for nucleic acids according to size.

Planar Elastic String is a small, Java based application specially designed to enable users to explore the evolution of an elastic string moving in the plane. Mathematically, it provides some insight into the dynamics of the wave equation. for WindowsAll


Platforms: Windows

Planar String is a small program written in Java that allows to explore the evolution of an elastic string moving in the plane. Mathematically, it provides some insight into the dynamics of the wave equation. The motion of the string is prescribed by configuring its positions at time 0 and at...


Platforms: Windows

The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution. GPS is a Java software, so it runs on multiple platforms,...


Platforms: Windows

iMethy is a handy, easy to use genome-wide DNA methylation analysis and visualization application based on next generation sequencing. Firstly, it holds the command-line pipeline to align the bisulfite-treated short read, identify the methylcytosine at CG/CHG/CHH sites, detect the methylation...


Platforms: Windows

JMotifFinder is a small, simple, easy to use application designed to offer users a graphical utility to find DNA Motifs such as Primers in huge EMBL Files. If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and...


Platforms: Windows

Pendulum is a small application written in Java that allows you to explore the evolution of a chain of elastically coupled pendulums. Mathematically, it provides some insight into the dynamics of the Sine-Gordon equation. The motion of the pendulums is determined by their positions at time 0 and...


Platforms: Windows

Primer Design is a simple utility created in order to design DNA primers for mutagenesis in the BGME lab (JHU). It allows users to select or enter background sequence and add current and new mutations. During the design process, users are presented with various updating checks to guide them.


Platforms: Windows

Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis. CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...


Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64

ReverseComplement is a handy, easy to use, simple application specially designed to help you determine the reverse, complement, and reverse complement of DNA and RNA sequences.


Platforms: Windows

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI...


Platforms: Mac

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI...


Platforms: Linux

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI...


Platforms: Windows

Bloof is an infrastructure for analytical processing of version control data. The main distribution provides a GUI for visualizing the evolution of a software project. External tools can access Bloof via Java API and a XML result mechanism.


Platforms: Windows, Mac, Linux

BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.


Platforms: Mac

SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.


Platforms: Windows, Mac, Linux

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.


Platforms: Mac

It can be modified to display a mask over the image or not to show an magnifier window.This jQuery plugin helps to embed detailed big images in any website.The script can be applied to single or multiple images on the same webpage.


Platforms: JavaScript

This projects simulates the evolution of critters in their environment. There are 32 critters which all have DNA in the form of two 8-bit numbers (actually they are 32-bit, but only 8 bits are used). The first set of genes determines the color of the critter. The other set of genes are sex genes....


Platforms: Mac