Graph Tools

Bio::Tools::Run::PiseApplication::align2model is a Bioperl class for align2model - create a multiple alignment of sequences to an existing model. Parameters: align2model (String) run (String) Run name db (Sequence) Sequences to align (-db) model_file (InFile) Model (-i) pipe:...

Bio::Tools::Run::PiseApplication::consensus is a Perl module. Bioperl class for: CONSENSUS Identification of consensus patterns in unaligned DNA and protein sequences (Hertz, Stormo) References: G.Z. Hertz and G.D. Stormo. Identification of consensus patterns in unaligned DNA and protein...

PostScript::Graph::Bar Perl module can draw a bar chart on a postscript file. SYNOPSIS Simplest Take labels and values from a csv file and output as a bar chart on a postscript file. use PostScript::Graph::Bar; my $bar = new PostScript::Graph::Bar(); $bar->build_chart("survey.csv");...


Platforms: *nix

Path::Graph is a Perl module created to generate paths from hash graph. SYNOPSIS Code 1 #!usr/bin/perl my %graph = ( A => {B=>1,C=>4}, B => {A=>1,C=>2}, C => {A=>4,B=>2} ); use Paths::Graph; my $g = Paths::Graph->new(-origin=>"A",-destiny=>"C",-graph=>%graph); my @paths =...


Platforms: *nix

Boost::Graph is a Perl interface to the Boost-Graph C++ libraries. SYNOPSIS use Boost::Graph; # Create an empty instance of a Graph my $graph = new Boost::Graph(directed=>0, net_name=>Graph Name, net_id=>1000); # add edges $graph->add_edge(node1=>a, node2=>b, weight=>1.1, edge=>edge...


Platforms: *nix

DGS Graph was created to provide an easy to install graphing script, capable of generating graphs for web presentation..


Platforms: *nix

OpenRM Scene Graph is a scene graph API that implements fully piplined-parallelized multistage and multithreaded rendering, and uses OpenGL as a graphics platform for hardware acceleration. A scene graph model is a useful way to organize data for rendering in a way that is particularly...


Platforms: *nix

ATA over Ethernet Tools are intended for use in conjunction with an ATA over Ethernet (AoE) driver for a Linux 2.6 kernel. They perform simple tasks like listing available devices, triggering device discovery, and restricting the network interfaces on which AoE is performed. Whats New in This...


Platforms: *nix

VK Toolset project is intended to aide MPEG developers and hobbyist in understanding and creating conformant MPEG streams. The current version focuses on the MPEG system layer (MPEG-1 System, MPEG-2 Program Stream), and MPEG-2 Transport bitstreams). Whats New in This Release: vk_tafe - UI...


Platforms: *nix

The ICMP Hostname Tools for Linux include a responder daemon, a lookup tool, and a nameswitch module to handle ICMP host name functions. The NSS module caches all requests (including failures) and honors the TTL value sent by the responding host. It uses a configuration file called...


Platforms: *nix

Text::Graph is a Perl extension for generating text-based graphs. SYNOPSIS use Text::Graph; blah blah blah Some data is easier to analyze graphically than in its raw form. In many cases, however, a full-blown multicolor graphic representation is overkill. In these cases, a simple graph can...


Platforms: *nix

Python Call Graph (pycallgraph) is a Python library that creates call graphs for Python programs pycallgraph is quite new. It seems to work well and I will most likely improve it in the near future!. Gravit is a free gravity simulator.


Platforms: *nix

The mjpeg programs are a set of tools that can do recording of videos and playback, simple cut-and-paste editing and the MPEG compression of audio and video under Linux. Recording is supported for the Zoran based cards like the Buz (Iomega), DC10 (MIRO, Pinnacle), Matrox Marvel cards and the...


Platforms: *nix

Cmos password recovery tools decrypts password stored in cmos used to access BIOS SETUP. Works with the following BIOSes: - ACER/IBM BIOS - AMI BIOS - AMI WinBIOS 2.5 - Award 4.5x/4.6x/6.0 - Compaq (1992) - Compaq (New version) - IBM (PS/2, Activa, Thinkpad) - Packard Bell - Phoenix...


Platforms: *nix

Heirloom Development Tools package provides yacc, lex, m4, make, and SCCS as portable derivatives of the utilities released by Sun as part of OpenSolaris. The OpenSolaris utilities were in turn derived from the original Unix versions, and are assumed be conforming implementations of the POSIX...


Platforms: *nix

Bio::Tools::CodonTable is a bioperl codon table object. SYNOPSIS # This is a read-only class for all known codon tables. The IDs are # the ones used by nucleotide sequence databases. All common IUPAC # ambiguity codes for DNA, RNA and animo acids are recognized. # to use use...


Platforms: *nix

lopster-tools is a set of tools for use with Lopster that allows users to view statistics for download and upload transfer, incomplete and finished files, how many MB are downloaded or uploaded, and the difference between down- and upload, amongst other features.. Get KLopsterUtils at...


Platforms: *nix

The net-tools package contains a collection of programs that form the base set of the NET-3 networking distribution for the Linux operating system. It contains the important tools for controlling the network subsystem of the Linux kernel including arp, hostname, ifconfig, netstat, rarp and...


Platforms: *nix

GD::Graph::Thermometer is a Perl module to generate progress graph on the fly. SYNOPSIS use GD::Graph::Thermometer; my $result = GD::Graph::Thermometer->new({ image_path => /path/to/image.png, type => png, goal => 80000, current => 20000, title => Funding the League for the Year ($),...


Platforms: *nix

Oasis XML Tools is a small utility to easily manage OpenOffice.org documents at xml level from outside OpenOffice.org suite. You can view and edit (with kwrite) the main xml files present in OpenOffice.org documents and update these documents with the changes. Also you can compare two or...


Platforms: *nix