Graph Tools

This script takes as input a graph and outputs Eulerian path (if such exists). The worst running time is O(E^2).

This add-in shows assembly dependency graphs, IL flow graphs and class diagrams. The addin uses Microsoft GLEE to render the graphs.Install - Download and unzip Graph.zip to the same directory as Reflector.exe. - Graph.zip includes a Reflector.exe.config file which will start Reflector running...

PHPGraphs is a set of graphing classes for php. The basic graph types are line, point, area, and bar. Also, an advanced Time Series graph is included. PHPGraphs supports large numbers of large sized data sets.


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

Bio::Tools::Run::PiseApplication::charge is a Perl module. Bio::Tools::Run::PiseApplication::charge Bioperl class for: CHARGE Protein charge plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/charge.html for available values): charge (String) init...


Platforms: *nix

Bio::Tools::Run::PiseApplication::freak is a Perl module. Bio::Tools::Run::PiseApplication::freak Bioperl class for: FREAK Residue/base frequency table or plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/freak.html for available values): freak...


Platforms: *nix

B::Graph is a Perl compiler backend to produce graphs of OP trees. SYNOPSIS perl -MO=Graph,-text prog.pl >graph.txt perl -MO=Graph,-vcg prog.pl >graph.vcg xvcg graph.vcg perl -MO=Graph,-dot prog.pl | dot -Tps >graph.ps This module is a backend to the perl compiler (B::*) which, instead...


Platforms: *nix

The purpose of the Graph Streaming API is to build a unified framework for streaming graph objects. Gephi’s data structure and visualization engine has been built with the idea that a graph is not static and might change continuously. By connecting Gephi with external data-sources, we leverage...


Platforms: Windows

Chart::Graph::Gnuplot is a function in module Chart::Graph that lets you generate graphs on the fly in perl. SYNOPSIS use Chart::Graph::Gnuplot qw(&gnuplot); gnuplot(%global_options, [%data_set_options, @matrix], [%data_set_options, @x_column, @y_column], [%data_set_options, < filename...


Platforms: *nix

Chart::Graph::Xrt3d is a Perl module for creating 3D graph charts. SYNOPSIS #Include module use Chart::Graph::Xrt3d qw(xrt3d); # Function call xrt3d(%options, @data_set ); This module is unmaintained, it worked with Sitrakas XRT, and hasnt been tested against newer versions. Sitraka...


Platforms: *nix

Chart::Graph::Xrt2d is a Perl module for creating graph charts. SYNOPSIS #Include module use Chart::Graph::Xrt2d qw(xrt2d); # Function call xrt2d(%options, [%data_options1, @data_set1], [%data_options2, @data_set2], . . ); This module is unmaintained, it worked with Sitrakas XRT,...


Platforms: *nix

Network Time Tools (NTT) is a set of network tools designed to provide monitoring of a network and the services on that network, and provide various reports on the hosts/services and optional alerts via email, pager, and cellphones. It also has the capability to send messages on user-specified...


Platforms: *nix

SVG::Graph is a Perl module to visualize your data in Scalable Vector Graphics (SVG) format. SYNOPSIS use SVG::Graph; use SVG::Graph::Data; use SVG::Graph::Data::Datum; #create a new SVG document to plot in... my $graph = SVG::Graph->new(width=>600,height=>600,margin=>30); #and create...


Platforms: *nix

Graph::ModularDecomposition is a Perl module for modular decomposition of directed graphs. SYNOPSIS use Graph::ModularDecomposition qw(pairstring_to_graph tree_to_string); my $g = new Graph::ModularDecomposition; my $h = $g->pairstring_to_graph( ab,ac,bc ); print "yesn" if...


Platforms: *nix

dvd+rw-tools project makes it possible to burn DVD images created by "dvdauthor" or "mkisofs" to DVD+R, DVD+RW, DVD-R, and DVD-RW disks, replacing "cdrecord-proDVD" in many cases. The package contains "growisofs" to burn DVD images or create a data DVD on the fly, "dvd+rw-format" to format a...


Platforms: *nix

Template::Tools::ttree module can process entire directory trees of templates. SYNOPSIS ttree [options] [files] The ttree script is used to process entire directory trees containing template files. The resulting output from processing each file is then written to a corresponding file in a...


Platforms: *nix

Bio::Tools::Run::PiseWorkflow is a class to create a Pise workflow using Pise application objects as methods. A workflow is defined by a set of methods which all instanciate the class PiseApplication. SYNOPSIS # First, create a Bio::Tools::Run::AnalysisFactory::Pise object: my $factory = new...


Platforms: *nix

Bio::Tools::AlignFactory is a base object for alignment factories. SYNOPSIS You wont be using this as an object, but using a dervied class like Bio::Tools::pSW Holds common Alignment Factory attributes in place.


Platforms: *nix

Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =...


Platforms: *nix

Chart::Graph is a Perl extension for a front-end to gnuplot, XRT, and Xmgrace. SYNOPSIS # EXAMPLE: gnuplot #make sure to include Chart::Graph use Chart::Graph:Gnuplot qw(gnuplot); gnuplot(%global_options, [%data_set_options, @matrix], [%data_set_options, @x_column, @y_column],...


Platforms: *nix

Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db...


Platforms: *nix