Gene Similarity

Recent studies describe that the level of gene expression between species is positively correlated with the time that has passed since the species split from a common ancestor (Ranz et al., 2006). Moreover, Khaitovich et al. (2004) found a linear relationship between divergence time and... Platforms: Mac

ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists... Platforms: Mac

Gene Studio is a free tool for modelling of DNA manipulation. It will allow to work with vectors, to design primers, to clone molecules and provide user friendly intewrface. Platforms: Mac

NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues. Platforms: Mac

Stanford NER (also known as CRFClassifier) is a Java implementation of a Named Entity Recognizer. Named Entity Recognition (NER) labels sequences of words in a text which are the names of things, such as person and company names, or gene and protein names. The software provides a general... Platforms: Mac

This plugin provides dynamic playlists for Amarok that are based on a similarity calculation instead on a set of rules as Amaroks own are. You start by dropping some tracks into the playlist and the plugin will try to fetch similar tracks from your local collection that fit in. The plugin is... Platforms: *nix

GSA-SNP is a gene set analysis software that can process SNP data as well as gene and haplotype data. Platforms: *nix

osdchat is a simple messaging utility that allows you to remotely send messages directly to the screen as an on-screen display (OSD). This may be used a lightweight messaging service in a local area network to message busy admins or communicate with friends who like to watch fullscreen movies or... Platforms: *nix

NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues. Platforms: *nix

MarcXimiL is a free, flexible, fully standards-compliant and efficient bibliographic similarity analysis framework. MarcXimiL comes out of the box with generic predefined similarity strategies. However, strategies may be customized in a flexible way: the order of comparisons between or within... Platforms: *nix

Pattern is a web mining module for the Python programming language. It bundles tools for data retrieval (Google + Twitter + Wikipedia API, web spider, HTML DOM parser), text analysis (rule-based shallow parser, WordNet interface, syntactical + semantical n-gram search algorithm, tf-idf + cosine... Platforms: *nix

FastSS is a string similarity searching algorithm. For each query, which consists of query string s and distance d, it retrieves all the words in a dictionary whose edit distance from s is equal or smaller than d. FastSS is an offline searching algorithm, as it needs to create an index of its... Platforms: *nix

Duplicate files are detrimental to your PC performance and usability. As they accumulate over and over, your valuable disk space will keep getting smaller. PCBooster Free Duplicates Remover is able to locate identical files by verifying name, attribute & date of creation. It also uses... Platforms: Windows, Windows 8, Windows 7

Full-text document search application. SeachInform combines phrasal search with the consideration of morphology and synonyms thesaurus with searching documents similar by content. The application is designed for fast search of information on PC at large data levels. Fast indexing (15-30 GB/h).... Platforms: Windows

CellNet is a multi function program designed to speed up, play and simplify access to the most common files in Windows. It hides at the top of the desktop ready to be pulled down, giving the user full control. Something like a much larger version of windows start menu, however, that's where the... Platforms: Windows, Windows 8, Windows 7, Windows Server

The first package for multi-precision floating point arithmetic in Excel 97/2000, with 160 functions for arithmetic, trigonometric, logarithm, exponential, hyperbolic calculus. Linear Algebra: System resolution with Gauss-Jordan algorithm (also in a didactic step-by-step method). Gauss-Seidel... Platforms: Windows

Abuse is so good that some specialists consider it to be a 2D version of the legendary Doom. Full of powerful weapons, missiles, aliens and excellent illumination effects, the only difference is that Abuse plays in 3rd person, while Doom plays in 1st.The argument of the game is this: you are the... Platforms: Windows

Statistics::Gap Perl module is an adaptation of the Gap Statistic. SYNOPSIS use Statistics::Gap; $predictedk = &gap("prefix", "vec", INPUTMATRIX, "rbr", "h2", 30, 10, rep, 90, 4); OR use Statistics::Gap; $predictedk = &gap("prefix", "vec", INPUTMATRIX, "rbr", "h2", 30, 10, rep, 90, 4,... Platforms: *nix

Text::Bloom can evaluate Bloom signature of a set of terms. SYNOPSIS my $b = Text::Bloom->new(); $b->Compute( qw( foo bar baz ) ); my $sig = $b->WriteToString(); $b->WriteToFile( afile.sig ); my $b2 = Text::Bloom::NewFromFile( afile.sig ); my $b3 = Text::Bloom->new(); $b3->Compute( qw(... Platforms: *nix

cx_Oracle is a Python extension module that allows access to Oracle, and conforms to the Python database API specifications. cx_Oracle module is currently built against Oracle 8.1.7, Oracle 9.2, and Oracle 10.2. This API has been defined to encourage similarity between the Python modules that... Platforms: *nix