Gene Similarity

Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =... Platforms: *nix

Come to enjoy our first fractal screensaver. This unique smooth animated fractal dragon will surely impress your imagination. Deep into unlimited self-similarity world of great sets. Blue figure is changing while dragon is running around some points in the complex plain. If it is hard for you to... Platforms: Windows, Windows 8, Windows 7, Windows Server

Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis. CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with... Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64

TreeFitter is designed as an accessible and handy application for parsimony-based tree fitting. TreeFitter is a CLi-based tool that can be used for analyzing problems in historical biogeography, coevolution, and in species tree - gene tree fitting. Platforms: Windows

Thanks to the recent release of Star Trek Online, the franchise created by visionary Gene Roddenberry over 40 years ago, is once again all the rage. This new massive online multiplayer game from Cryptic Studios puts players at the helm of their very own Starship and lets Trek fans boldly go where... Platforms: Mac

Mallard is a handy, Java based application based on the Pintail algorithm designed to work by comparing evolutionary distances between a query and subject sequence over the length of the 16S rRNA gene (small subunit rRNA), by employing a sampling window of specified size, progressing a fixed... Platforms: Windows

Free Deep Space 9 Screensaver Conceived in 1991, shortly before Gene Roddenberry?s death, DS9 centers on the formerly Cardassian space station, Terok Nor. After the Bajorans liberated themselves from the long and brutal Cardassian Occupation, the United Federation of Planets is invited by the... Platforms: Windows

Free The Next Generation Screensaver Star Trek: The Next Generation (often abbreviated to TNG) is an American science fiction television series created by Gene Roddenberry as part of the Star Trek franchise. Created about 21 years after the original Star Trek, and set in the 24th century from the... Platforms: Windows

AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general. AnnaF was build upon the pipeline framework Anna. Platforms: Windows, Mac, Linux

The Gene Expression Programming Framework in Java.It separates the process of evolution from the process of interpretation of the chromosome, allowing the use of various schemes in the chromosome. Platforms: Windows, Mac, Linux

EPTable is a simple web-based tool to analyze microarray gene expression profiles with additional gene profiles. Platforms: Mac, BSD, Linux

Ericscript is a computational framework to detect gene fusions from paired end RNA-seq data with high sensitity and specificity. Platforms: Windows, Mac, Linux

EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries and provides several layers of annotation based on Entrez Gene to allow the user to highlight useful genes and manage cDNA library projects. Platforms: Windows, Mac, Linux

Genevar (GENe Expression VARiation) is a platform of database and web services for the integrative analysis and visulization of SNP-gene assocaitaions in eQTL studies. Platforms: Windows, Mac, Linux

IGBM (Identification of gene blocks in microorganisms) implements a BLAST-like method to infer conserved gene clusters among closely related prokaryotes, and provides a graphical user interface to navigate the identified clusters and their annotated info Platforms: Windows, Mac, Solaris, Linux

This project implements the techniques used in this paper: @INPROCEEDINGS{Andres10a, author = {JesAss Andrés-Ferrer and Germán Sanchis-Trilles and Francisco Casacuberta}, title = {Similarity Word-Sequence Kernels for Sentence Clustering}, booktitle = {Proceedings of the 8th... Platforms: Mac, Linux

Jeep is a modular, abstract and distributed evolutionnary programming core written in Java, allowing to grow autonomous agents as well a gene pool (as in genetic algorithms). Platforms: Windows, Mac, Linux

Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments. Platforms: Windows, Mac, Linux

Manatee is a web-based gene evaluation and genome annotation tool. Manatee can store and view annotation for prokaryotic and eukaryotic genomes. Platforms: Windows, Mac, Linux

MarcXimiL is a flexible multi-platform bibliographic similarity analysis framework. Features: deduplication, information monitoring, visual analysis, plagiarism detection. Supported: MARCXML, OAI-PMH2 harvesting, and importation of text MARC. Platforms: Windows, Mac, BSD, Solaris, Linux