Burrows Wheeler Transform

libUTL++ is a cross-platform C++ class library that provides a set of commonly useful functionality and abstractions to expedite C++ application development. Here are some of the highlights in terms of functionality: utl::Object provides a common interface for basic object functionality such...

The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).

The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).


Platforms: Windows, Mac, Linux

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human...


Platforms: *nix

PDL::Transform::Cartography Perl module contains useful cartographic projections. SYNOPSIS # make a Mercator map of Earth use PDL::Transform::Cartography; $a = earth_coast(); $a = graticule(10,2)->glue(1,$a); $t = t_mercator; $w = pgwin(xs); $w->lines($t->apply($a)->clean_lines());...


Platforms: *nix

PDL::Transform is a Perl module that coordinate transforms, image warping, and N-D functions. SYNOPSIS use PDL::Transform; my $t = new PDL::Transform:: ( ) $out = $t->apply($in) # Apply transform to some N-vectors (Transform method) $out = $in->apply($t) # Apply transform to some...


Platforms: *nix

CAD::Drawing::Manipulate::Transform is a Perl module with Matrix methods for CAD::Drawing. Provides 3D transformation methods (based on traditional matrix algorithms) for Drawing.pm objects. Coordinate System All of these methods assume a RIGHT-HANDED coordinate system. If you are using a...


Platforms: *nix

Grid::Transform is a Perl module with fast grid transformations. SYNOPSIS use Grid::Transform; $g = Grid::Transform->new([a..o], rows=>5); $g->rotate_270->flip_vertical; print join( , $g->grid), "n"; The Grid::Transform module provides fast methods to transform a grid of arbitrary data...


Platforms: *nix

The function plot_hht is a realization of the Hilbert-Huang transform (HHT). The HHT decomposes a signal into intrinsic mode functions (or IMFs), and obtain the instantaneous frequency data. It is designed to work well for data that are nonstationary and nonlinear...


Platforms: Matlab

The function implement the 2D dyadic(Paley) ordered fast in-place Walsh-Hadamard transform, which can be used in signal processing, pattern recognition and Genetic alogorithms. This algorithm uses a Cooley-Tukey type signal flow graph and is implemented in N log2 Nadditions and subtractions. Data...


Platforms: Matlab

computes the sequency-ordered discrete Hadamard transform


Platforms: Matlab

This program is open source code of fast Fourier transform in matlab.Where y is the input argument and p is the normalized size of the input. Lety = [1 2 3 4 ];x= length(y);m= log2(x);p= ceil(m);To call the function useft2(y,p);


Platforms: Matlab

The function implement the 1D Walash Transform which can be used in signal processing,pattern recognition and Genetic algorithms. The Formula of 1D Walsh Transform is defined as : N-1 q-1 ---- -- 1 | | b[i](m)*b[q-1-i](u) W(u) = --- / f(m)| | (-1) ,u = 0,...,N-1 N ---- | | m=0 i=0 where for...


Platforms: Matlab

The function implement the 1D Walash Transform which can be used in signal processing,pattern recognition and Genetic algorithms. The Formula of 1D Walsh Transform is defined in mfile


Platforms: Matlab

computes the naturally-ordered discrete Hadamard transform


Platforms: Matlab

PHP transForm is a form generator and processor that allows a website developer an easy way to view/add/edit/delete data in various databases.In order to use PHP transForm, you must be using at least PHP4.1.1.This PHP version includes the PEAR DB database abstraction code used by PHP...


Platforms: PHP

Fourier Transform Lab Student Edition is an advanced application designed for performing Fourier transformations, which can be useful in teaching Crystallography, since they are related to Optical Transforms (e.g. laser diffraction patterns). Furthermore one may get a quick hands-on experience...


Platforms: Windows

Transform SWF is an easy to use library for reading and writing Flash and Flash Video files. As of 25/11/2010 the latest version (3.0) can now be found at GitHub, https://github.com/StuartMacKay/transform-swf.


Platforms: Windows, Mac, Linux

PHP transForm is a form generator and processor that allows a website developer an easy way to view/add/edit/delete data in various databases. In order to use PHP transForm, you must be using at least PHP4.1.1. This PHP version includes the PEAR DB database abstraction code used by PHP transForm....


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

This article consists of a brief discussion of the energy density over time or frequency that is obtained with the wavelet transform. Also an efficient algorithm is suggested to calculate the continuous transform with the Morlet wavelet. The energy values of the Wavelet transform are compared...


Platforms: Matlab