Burrows Wheeler Transform

main executing reference usage: usage_BurrowsWheelerTransform.mFor this program, the '$' has to be explicitly stated.The objective is to illustrate Burrows-Wheeler Matrix (BWM) Transform.BWT(agcagcagact) = tgcc$ggaaaacBWM... Platforms: Matlab

Xceed Streaming Compression Library is a high-performance "raw" compression library. It offers the ability to compress and decompress streaming data, buffers, strings or single files and supports multiple compressed data formats. Unlike Xceed Zip Compression Library, this ultra light library... Platforms: Windows

libUTL++ is a cross-platform C++ class library that provides a set of commonly useful functionality and abstractions to expedite C++ application development. Here are some of the highlights in terms of functionality: utl::Object provides a common interface for basic object functionality such... Platforms: *nix

The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT). Platforms: Windows, Mac, Linux

The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT). Platforms: Windows, Mac, Linux

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human... Platforms: *nix

PDL::Transform::Cartography Perl module contains useful cartographic projections. SYNOPSIS # make a Mercator map of Earth use PDL::Transform::Cartography; $a = earth_coast(); $a = graticule(10,2)->glue(1,$a); $t = t_mercator; $w = pgwin(xs); $w->lines($t->apply($a)->clean_lines());... Platforms: *nix

PDL::Transform is a Perl module that coordinate transforms, image warping, and N-D functions. SYNOPSIS use PDL::Transform; my $t = new PDL::Transform:: ( ) $out = $t->apply($in) # Apply transform to some N-vectors (Transform method) $out = $in->apply($t) # Apply transform to some... Platforms: *nix

CAD::Drawing::Manipulate::Transform is a Perl module with Matrix methods for CAD::Drawing. Provides 3D transformation methods (based on traditional matrix algorithms) for Drawing.pm objects. Coordinate System All of these methods assume a RIGHT-HANDED coordinate system. If you are using a... Platforms: *nix

Grid::Transform is a Perl module with fast grid transformations. SYNOPSIS use Grid::Transform; $g = Grid::Transform->new([a..o], rows=>5); $g->rotate_270->flip_vertical; print join( , $g->grid), "n"; The Grid::Transform module provides fast methods to transform a grid of arbitrary data... Platforms: *nix

Transform PDF documents to AFP with enterprise class software in high volume environment. The software allows users to convert PDF to AFP by dropping or uploading PDF files into a hot folder and getting the converted AFP in the output folder. It's a server based product, and you can share the... Platforms: Windows

AFP2PCL Transform Server enables users to batch convert AFP documents IBM MO:DCA (AFP, IOCA and PTOCA) to PCL and PCL-XL via input and output folder on Microsoft Windows. Unlike other software solutions simply rasterizing the AFP document to full-page images, AFP2PCL Transform Server maintains... Platforms: Windows

AFP2HTML Transform Server enables users to batch convert AFP documents IBM MO:DCA (AFP, IOCA and PTOCA) to web pages in HTML format via an input and output folder on Microsoft Windows. Unlike other software solutions simply rasterizing the AFP document to full-page images, AFP2HTML Transform... Platforms: Windows

Transform AFP documents to PDF files with enterprise class software in high volume environment. The software enables PC users to convert AFP to PDF files by uploading or dropping AFP files into a hot folder and obtaining the conversion result in Adobe PDF (Portable Document Format) in an output... Platforms: Windows

The function plot_hht is a realization of the Hilbert-Huang transform (HHT). The HHT decomposes a signal into intrinsic mode functions (or IMFs), and obtain the instantaneous frequency data. It is designed to work well for data that are nonstationary and nonlinear... Platforms: Matlab

The function implement the 2D dyadic(Paley) ordered fast in-place Walsh-Hadamard transform, which can be used in signal processing, pattern recognition and Genetic alogorithms. This algorithm uses a Cooley-Tukey type signal flow graph and is implemented in N log2 Nadditions and subtractions. Data... Platforms: Matlab

computes the sequency-ordered discrete Hadamard transform Platforms: Matlab

This program is open source code of fast Fourier transform in matlab.Where y is the input argument and p is the normalized size of the input. Lety = [1 2 3 4 ];x= length(y);m= log2(x);p= ceil(m);To call the function useft2(y,p); Platforms: Matlab

The function implement the 1D Walash Transform which can be used in signal processing,pattern recognition and Genetic algorithms. The Formula of 1D Walsh Transform is defined as : N-1 q-1 ---- -- 1 | | b[i](m)*b[q-1-i](u) W(u) = --- / f(m)| | (-1) ,u = 0,...,N-1 N ---- | | m=0 i=0 where for... Platforms: Matlab

The function implement the 1D Walash Transform which can be used in signal processing,pattern recognition and Genetic algorithms. The Formula of 1D Walsh Transform is defined in mfile Platforms: Matlab