Amino Acids
What is snpEff? It's a variant effect predictor tool, it predicts the effect of genetic variations (SNPs, insertions, deletions and MNPs). Release Candidate 1 Take a look at all the new features added Database download command, e.g. "java -jar snpEff.jar download GRCH37.64" RefSeq annotations...
Platforms: Mac
License: Freeware | Size: 3.73 MB | Download (37): snpEff Download |
nebseq is a Python module for basic biological sequence manipulations. Import as usual >>> import nebseq Reverse complements The only note here is that revcomp does not check the input sequence to see if it looks like DNA or RNA. >>> nebseq.revcomp('ACGT') 'ACGT' >>>...
Platforms: *nix
License: Freeware | Size: 10.24 KB | Download (37): nebseq Download |
ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of...
Platforms: *nix
License: Freeware | Size: 727.04 KB | Download (36): ProDy for Linux Download |
The Nucleic Acid Modeling Tool(NAMOT) is a program to allow users to manipulate molecular models of nucleic acids based on a set of reduced co-ordinates developed at Los Alamos National Laboratory and the Max Planck Institute for Biophysical Chemistry.
Platforms: *nix
License: Freeware | Size: 1.09 MB | Download (35): NAMOT-Nucleic Acid MOdelling Tool Download |