Amino Acids
Bio2Midi converts the text of a DNA or protein sequence to a MIDI file, which you may immediately audition, or import into any MIDI sequencer for further compositional processing. Choose to listen to the sequences as 4-note DNA bases, or as 20-note protein amino acids, or both at once. You can...
Platforms: Windows
License: Freeware | Size: 1.11 MB | Download (724): Bio2MIDI Download |
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded...
Platforms: Mac, Linux
License: Freeware | Size: 9.92 MB | Download (675): Gromacs for Mac OS X and Linux Download |
CurTiPot pH & Acid-Base Titration Curves. A powerful all-in-one freeware for pH calculation, experimental data analysis and simulation of titration curves of acids, bases, salts and buffers (from simple solutions to complex mixtures), with interpolation, smoothing and nonlinear regression....
Platforms: Windows
License: Freeware | Size: 693 KB | Download (639): CurTiPot pH & Acid-Base Titration Curves Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Mac
License: Freeware | Size: 3.7 MB | Download (602): GENtle for Mac OS X Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Linux
License: Freeware | Size: 1.7 MB | Download (529): GENtle for Linux Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Windows
License: Freeware | Size: 2.7 MB | Download (512): GENtle for Windows Download |
This highly functional and easy to use Scientific Calculator is a must for science students. The main calculator has over 40 functions while an extensive number of utilities, tools and science data reference systems can be called. The calculator contains one of the most extensive measurement...
Platforms: Windows, Windows 8, Windows 7, Windows Server
License: Freeware | Size: 15.36 MB | Download (498): DPLS Scientific Calculator Download |
MPEx is a small, easy to use application designed to help you explore the topology and other features of membrane proteins by means of hydropathy plots based upon thermodynamic and biological principles.
The program is based on sliding-window analysis that represents an amino acid sequence as a...
Platforms: Windows
License: Freeware | Download (483): MPEx Download |
The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...
Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64
License: Freeware | Download (466): FastPCR Professional Download |
The usual way to demonstrate saturation in nucleotide sequences is to plot the fraction of differences between sequences against the evolutionary distance separating them. When the number of observed differences, for example for the fraction of third codon positions, no longer increases with...
Platforms: Windows
License: Freeware | Download (451): ASaturA Download |
The Amino Acid Table widget displays general information on amino acids conformed with the IUPAC-IUB recommendations.
Platforms: Mac
License: Freeware | Download (156): Amino Acid Table Widget Download |
The DNA Molar Converter widget is a Dashboard widget that allows to perform molar conversions for nucleic acids according to size.
Platforms: Mac
License: Freeware | Download (138): DNA Molar Converter Widget Download |
The ProtParam widget computes physico-chemical parameters for your protein sequences at ExPASy. You just have to type or paste your sequence in the input field.
Platforms: Mac
License: Freeware | Download (136): Protparam Widget Download |
Bio::AlignIO::bl2seq is a bl2seq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class, as in: use Bio::AlignIO; $in = Bio::AlignIO->new(-file => "inputfilename" , -format => bl2seq); $aln = $in->next_aln(); This object can create...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (129): Bio::AlignIO::bl2seq Download |
Bio::Tools::CodonTable is a bioperl codon table object. SYNOPSIS # This is a read-only class for all known codon tables. The IDs are # the ones used by nucleotide sequence databases. All common IUPAC # ambiguity codes for DNA, RNA and animo acids are recognized. # to use use...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (127): Bio::Tools::CodonTable Download |
The BLAST widget provides a quick access to the Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
Platforms: Mac
License: Freeware | Download (119): BLAST Widget Download |
Nucleotide BLAST Widget provides a quick access to the Nucleotide Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
Platforms: Mac
License: Freeware | Download (115): Nucleotide BLAST Widget Download |
The Basic melting temperature widget allows to calculate the melting temperature of a nucleic acid sequence.
Platforms: Mac
License: Freeware | Size: 96 KB | Download (109): Basic melting temperature widget Download |
The Nucleic Acid Nomenclature is a Dashboard widget that displays general information on nucleic acids (symbol, meaning, complement and origin of designation) conformed with the IUPAC-IUB recommandations.
Platforms: Mac
License: Freeware | Download (107): Nucleic Acid Nomenclature Widget Download |
The Nucleic Acid Table widget displays useful information on nucleic acids including molecular weigth and composition.
Platforms: Mac
License: Freeware | Download (107): Nucleic Acid Table Download |