Alignments
Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites containing...
Platforms: Mac
License: Freeware | Size: 296.96 KB | Download (41): Gmaj Download |
bedtools: a flexible suite of utilities for comparing genomic features. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM....
Platforms: Mac
License: Freeware | Size: 890.88 KB | Download (38): BEDTools Download |
libgtkhtml is a GNOME library for gtkhtml2 module. Installation: The simplest way to compile this package is: 1. `cd to the directory containing the packages source code and type `./configure to configure the package for your system. If youre using `csh on an old version of System V, you...
Platforms: *nix
License: Freeware | Size: 819.2 KB | Download (137): libgtkhtml Download |
Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =...
Platforms: *nix
License: Freeware | Size: 10.24 KB | Download (105): Algorithm::NeedlemanWunsch Download |
The goal of BioX is to bring easy-to-use sequence analysis to Mac-using biologists. It features graphical editors for sequences and multiple alignments, and supports opening and saving of many different sequence file formats. Analysis functions currently include searching for primers, restriction...
Platforms: Mac
License: Freeware | Download (126): BioX Download |
MolViewX is the OS X version of MolView. Nearly all of the features of MolView have been ported. MolViewX now outputs POV-Ray files for rendering. MolViewX also outputs VRML files for Strata 3DPro and a number of UNIX based applications. MolViewX can read several types of coordinate files and...
Platforms: Mac
License: Freeware | Download (101): MolviewX Download |
Article creator is a free article creation software for article marketers. It allows you to work on multiple articles at once without opening multiple windows for each. And it is totally free for all my fellow article marketers. It is 100% free. Features include : advanced editing capabilities...
Platforms: Windows
License: Freeware | Size: 4.21 MB | Download (648): Article Creator Download |
Service Invoice Template is an Excel workbook file which provides an easy to use, neat and simple invoice form for small businesses who provides service to their clients and don't have a need to ship physical products. The invoice format in this Service Invoice Template is for intended for...
Platforms: Windows
License: Freeware | Size: 34.73 KB | Download (197): Service Invoice Template Download |
Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is...
Platforms: Windows
License: Freeware | Size: 5.2 MB | Download (420): Open3DALIGN x64 Download |
GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard...
Platforms: Windows
License: Freeware | Size: 2.8 MB | Download (441): GenomeView Download |
Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry.
Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...
Platforms: Windows
License: Freeware | Size: 39.6 MB | Download (468): Geneious Basic Download |
iMethy is a handy, easy to use genome-wide DNA methylation analysis and visualization application based on next generation sequencing.
Firstly, it holds the command-line pipeline to align the bisulfite-treated short read, identify the methylcytosine at CG/CHG/CHH sites, detect the methylation...
Platforms: Windows
License: Freeware | Download (458): iMethy Download |
Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry.
Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...
Platforms: Windows
License: Freeware | Size: 39.6 MB | Download (504): Geneious Basic x64 Download |
inGAP is a handy, easy to use application specially designed to offer you an integrative next-generation genome analysis pipeline, which employed a Bayesian principle to detect single nucleotide polymorphisms (SNPs), small insertion/deletions (indels). inGAP has been applied to a number of genome...
Platforms: Windows
License: Freeware | Download (417): inGAP Download |
Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is...
Platforms: Mac
License: Freeware | Size: 3.6 MB | Download (434): Open3DALIGN for Mac OS X Download |
SpliceGrapher predicts alternative splicing patterns and produces splice graphs that capture in a single structure the ways a gene's exons may be assembled. It enhances gene models using evidence from next-generation sequencing and EST alignments.
FEATURES:
· splice graph prediction
·...
Platforms: Windows
License: Freeware | Download (448): SpliceGrapher Download |
Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is...
Platforms: Windows
License: Freeware | Size: 4.1 MB | Download (424): Open3DALIGN Download |
Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is...
Platforms: Linux
License: Freeware | Size: 3.3 MB | Download (430): Open3DALIGN for Linux Download |
ncRNA Mapper is a computer program that gives more insight in the localization of sequencing fragments.
Given that sequencing of RNA gives reads at fixed base-positions, ncRNA Mapper analyzes the alignments (generated by Short Sequence Location Mapper; SSLM) by: visualizing them, retrieving the...
Platforms: Windows
License: Freeware | Download (425): ncRNA Mapper Download |
Genovar is a stand-alone software built using the Java programming language in order to detect unknown genomic variants.
The program can also analyze SNP-related copy number variant regions, and comprehensively visualize genomic data such as array CGH and sequence alignments results.
Platforms: Windows
License: Freeware | Download (440): Genovar Download |