Biomedical

allCode.m contains the sequence of code used during the demonstration.The data files:medflies.mat - the fruitfly dataflicker.mat - the flickering light databreastcancer.mat - the breast cancer mortality datasulfate.mat - the blood concentration data.Fisher's iris data are available in the... Platforms: Matlab

This is a demo program of the paper J. Tian and L. Chen, "Image despeckling using a non-parametric statistical model of wavelet coefficients," Biomedical Signal Processing and Control, Vol. 6, No. 4, Oct. 2011, pp. 432-437. Platforms: Matlab

As part of implementation of CMS for Biomedical applications, it is often a requirement to display publications from well known databases. One such database is called PubMed which is provided National Center for Biotechnology Information, National Library of Medicine and National Institutes of... Platforms: PHP

iSurf BrainView is a Brain MRI tutor based on the MRI automatic segmentation produced by FreeSurfer. FreeSurfer is a software package developed by investigators at the Athinoula A. Martinos Center for Biomedical Imaging. This App uses its automatic segmentation to produce an automatic atlas of... Platforms: Mac

pIcarver is a tool to visualize theoretical distributions of peptide pI on a given pH range, and proposes a fractionation scheme that generates fractions with similar peptide frequencies. This tool has been developed as a service of the Bioinformatics Core Facility for Proteomics, within a... Platforms: Mac

Annotare is a tool for annotating biomedical investigations and resulting data. It is a stand-alone desktop application that features 1) a set of intuitive editor forms to create and modify annotations, 2) support for easy incorporation of terms from biomedical ontologies, 3) standard templates... Platforms: Mac

The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites (via... Platforms: Mac

LINNAEUS is a general-purpose dictionary matching software, capable of processing multiple types of document formats in the biomedical domain (MEDLINE, PMC, BMC, OTMI, text, etc.). It can produce multiple types of output (XML, HTML, tab-separated-value file, or save to a database). It also... Platforms: Mac

ABNER is a software tool for molecular biology text analysis. It began as a user-friendly interface for a system developed as part of the NLPBA/BioNLP 2004 Shared Task challenge. The details of that system are described in the paper below (Settles, 2004). At ABNER's core is a statistical machine... Platforms: Mac

This software is the event parser component from the Stanford and FAUST submissions to the BioNLP shared task. It does not include the event reranker component currently (this performance of the parser alone is generally around 0.5-1% lower than the reranked parser). The event parser system is... Platforms: Mac

Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier. Platforms: *nix

caBIO (cancer Bioinformatics Infrastructure Objects) is a robust resource for accessing biomedical annotations from curated data sources in an integrated view in support of knowledge discovery. The entities that concern the Central Dogma of Molecular Biology are the core of the model. Data for... Platforms: *nix

FastRequest HelpDesk- Workorder, Web form and HelpDesk software. Al-in-one. FastRequest HelpDesk is the first Work Order software or help desk software to allow the creation of customized Web forms or online service request (Checkbox, Radio Button, Text Box, Drop-down List¦). You can... Platforms: Windows

BOINC project lets you donate computing power to scientific research projects. Some projects are: - Climateprediction.net: study climate change - Einstein@home: search for gravitational signals emitted by pulsars - LHC@home: improve the design of the CERN LHC particle accelerator -... Platforms: *nix

CCFlauncher is the meta-tool for starting and joining a CCF collaborative computing session. With CCFlauncher you can invite your colleagues/friends to join you in a shared X windows virtual desktop with multiparty audio conferencing, white board, and file sharing in just a few mouse clicks. In... Platforms: *nix

Volocity is the realization of Improvision's objective to provide the scientist with an interactive volume visualization system that will run on a standard desktop computer. Volume interactivity is the key to providing the user with an enhanced perception of depth and realism. Interactivity also... Platforms: Mac

Pedigree-Draw 6 is a Macintosh OS X application that provides for creation, editing and drawing of pedigrees, or family trees, of human or non-human extended family lineages. It was developed originally for use in analyzing population data gathered for biomedical and genetic research. Although... Platforms: Mac

OpenAnalyser is a Java program for scientifc data analysis. It was especially designed to analyse cardiovascular florescence imaging data. OpenAnalyser provides a simple, yet powerful plugin system, which allows the extension of the program functionality with user contributed code, including... Platforms: Windows

BioImageXD is a software package for processing, analyzing and visualizing multidimensional image data. As the name implies, the software is primarily intended for biological data, for instance confocal microscopy images of living cells, but it is fully suitable for working with any kind of... Platforms: Windows, XP, 2003, Windows Vista, 7

A set of advanced tools for spectral estimation, decomposing of time series into trend, oscillatory components and noise with sophisticated statistical tests, cross-spectrum and coherence estimation, data compression, as well as reconstruction and prediction. KSpectra Toolkit takes full advantage... Platforms: Mac