Biomedical

Febrl, also known as Freely Extensible Biomedical Record Linkage is a tool that has been designed for data standardization. This Python-based instrument can also be used for probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record... Platforms: Windows

BioSig is an open source software library for biomedical signal processing, featuring for example the analysis of biosignals such as the electroencephalogram (EEG), electrocorticogram (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG), respiration, and so on. Major... Platforms: Windows

In biomedical applications it need to be using simple circuit for convey the data information ,this design it can be used as digital modulator for low bit rate. And select or programming the appropriate scheme modulation (ASK, FSK, BPSK). Platforms: Matlab

Daniel's XL Toolbox is a free add-in for Microsoft® Excel® for researchers in the biomedical and other sciences. Its worksheet management features also make it a useful general-purpose addin. There are several commercial software packages for scientific data analysis and presentation. While... Platforms: Windows

The introduction of digital technology in medicine as the DICOM (Digital Imaging and Communication in Medicine) standard to the transmission and the archiving of biomedical digital images and of sanitary informations has removed the real necessity to maintain the radiographic videos on classic... Platforms: Windows

BANNER is a named entity recognition system intended primarily for biomedical text. It uses conditional random fields as the primary recognition engine and includes a wide survey of the best techniques described in recent literature. Platforms: Windows, Mac, Linux

The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation. Platforms: Windows, Mac, Linux

BioQuery is a bioinformatics tool that acts as a query builder for genetic, protein, publication, and other biomedical databases. BioQuery is also an update service that periodically resubmits saved searches and sends you new data as it is found. Platforms: Windows, Mac, Linux

BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. A standalone signal viewer supporting more than 30 different data formats is also provided. Platforms: Windows, Mac, Linux

Dogwood is an ontology-aware Distributed Annotation System (DAS) server framework for the integration of biological, biomedical and clinical data. Platforms: Windows, Mac, Linux

MutationFinder is a biomedical natural language processing (NLP) system for extracting mentions of point mutations from free text. MutationFinder achieves high performance (99% precision, 81% recall on blind test data) as an information extraction system Platforms: Windows, Mac, Linux

OBOES (Open Biomedical Ontology-Based Enrichment and Search) is an information-theory-based platform that embeds new integrative methods allowing biologists to evaluate new hypotheses. Platforms: Windows, Mac, Linux

Modular application for biomedical data processing. Platforms: Windows, Mac, Linux

A computer model has been developed that provides a realistic description of the variation of the human heart surface shape during a single cardiac cycle. The model is proposed for investigations in the field of biomedical engineering, where computer simulation is necessary.A MATLAB spline... Platforms: Matlab

As part of implementation of CMS for Biomedical applications, it is often a requirement to display publications from well known databases. One such database is called PubMed which is provided National Center for Biotechnology Information, National Library of Medicine and National Institutes of... Platforms: PHP

iSurf BrainView is a Brain MRI tutor based on the MRI automatic segmentation produced by FreeSurfer. FreeSurfer is a software package developed by investigators at the Athinoula A. Martinos Center for Biomedical Imaging. This App uses its automatic segmentation to produce an automatic atlas of... Platforms: Mac

Annotare is a tool for annotating biomedical investigations and resulting data. It is a stand-alone desktop application that features 1) a set of intuitive editor forms to create and modify annotations, 2) support for easy incorporation of terms from biomedical ontologies, 3) standard templates... Platforms: Mac

The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites (via... Platforms: Mac

Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier. Platforms: *nix

caBIO (cancer Bioinformatics Infrastructure Objects) is a robust resource for accessing biomedical annotations from curated data sources in an integrated view in support of knowledge discovery. The entities that concern the Central Dogma of Molecular Biology are the core of the model. Data for... Platforms: *nix