Biology Glossary

Create, check, annotate, merge, diff, split SBML (System Biology Markup Lanugage) documents. The latest version of semanticSBML is webbased with a RESTful interface.

In biology, graph formalism is prevalently used. This graph package is for you to analysis biomolecular interaction network with the comfort of MATLAB. The package includes algorithm like modularity, clustering coefficient, all-pair shortest path (amazingly fast, great if you have 64-bit) and so...

Estimates the noise standard deviation from an (MRI) image (2D) corrupted with Rician noise based on the skewness of the distribution. This method doesn't depend on the background for noise estimation. Can be used for MR images with and without background.Ref: Jeny Rajan, Dirk Poot, Jaber Juntu...


Platforms: Matlab

Aqua CMS, Content Management System aimed at corporate companies and magazine publishers with advanced editing options. It allows users to edit pages in real time with what you see is what you get previews. Aqua Code Editor is an advanced editor that lets you edit the files on your website. It...


Platforms: PHP

This toolbox provides direct access to cancer genomics data from within the MATLAB environment. The toolbox will query the Cancer Genomics Data Server Web API, provided by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center, and return data in a structured format.A tutorial...


Platforms: Matlab

Pages Autolink is a SEO plugin which automatically turns page names, when used in posts and pages, in links to the corresponding page URLs. Keeps the original words case in text. It's particulary useful for bloggers who build a glossary using pages, for each time a word of the glossary is used in...


Platforms: PHP

This plugin creates a glossary for your WordPress powered site. It will create an additional section in the admin panel, where you can add new terms to your glossaryA few notes about the sections above: * "Browse glossary" here you will see all terms. * "Add term" here you will add new...


Platforms: PHP

WordGallery Glossary is a plugin that makes it easy to add a glossary of terms to your WordPress website. Simply add terms just like any post or page, then create a page to display them on and select it in the options. Options for the glossary page also include using jQuery to hide definitions on...


Platforms: PHP

Parses posts for defined glossary terms and adds links to the static glossary page containing the definition. The plugin also creates a tooltip containing the definition which is displayed when users mouseover the term. Visit http://thestable.info/glossary for a demo. Based on...


Platforms: PHP

Bio link contains solutions to some topics in biology and bioinformatics. The solutions will be made available as soon as they are developed. Therefore they may contain bugs. Please let me know if you encounter a bug so that it can be fixed asap. Most tools will be in JAVA. The jar files can be...


Platforms: Matlab

The script is a Matlab implementation of reference gene selection reported inJo Vandesompele et al, "Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes", Genome Biology 2002, 3 (7).


Platforms: Matlab

ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.


Platforms: *nix

Java Fish Hunter is a small game where the player is a sub with a multiple weapons to kill fish. If the fish touch you and you have no shield power, you die. Designed because I wanted to kill the fish from the Marine Biology Case Study.


Platforms: Mac

The Biochemical Abstract Machine (BioCham) is a modelling environment for systems biology, with some unique features for static analysis or for inferring unknown model parameters from temporal logic constraints. BioCham is mainly composed of : a rule-based language for modeling biochemical...


Platforms: Mac

Biomatters was founded on the principle of creating software that can be used by all researchers in their daily work. Our technology converts raw data into meaningful, visual information, simplifying research and ultimately improving efficiency. Biomatters???*a*? flagship software packages are:...


Platforms: *nix

Efficient Universal Generator You will find in this documentation : * Introduction : introduction to EUGene's principles * ObjectModel : EUGene main meta-model used for generation * Generation process : Generation steps * Templates : Templates writing (Transformer et Generator ) *...


Platforms: Mac

ABNER is a software tool for molecular biology text analysis. It began as a user-friendly interface for a system developed as part of the NLPBA/BioNLP 2004 Shared Task challenge. The details of that system are described in the paper below (Settles, 2004). At ABNER's core is a statistical machine...


Platforms: Mac

Java program to create a (potentially multilingual) glossary of the unique words in any given Lojban text.


Platforms: Mac

SBSI (Systems Biology Software Infrastructure) is a suite of tools for systems biology, such as parallelized numerical algorithms, and a Java, Eclipse RCP based client for visualizing results, running simulations, and integrating SBML based plugins.


Platforms: *nix

The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in computational structural biology to facilitate and standardize the development of molecular modeling, design and analysis tools.


Platforms: *nix