Biology Glossary

Categories Autolink is a SEO plugin which automatically turns category names, when used in posts and pages, in links to the corresponding category URLs. Keeps the original words case in text. It's particulary useful for bloggers who build a glossary using categories, for each time a word of the...

PHLAWD (pronounced flawd) allows for the creation of large (mega) phylogenies using NCBI databases. There are binaries available for Linux and MacOSX in the downloads section. PHLAWD takes advantage (or at least part of it) of multi threaded computers and can produce matrices of more than 100,000...

Factolex.com is a fact lexicon. We split up knowledge into small sentences: factsYou can use the data from Factolex to describe terms you are using in your blog posts or blog pages, and then place the glossary anywhere in your post using the shortcode [factolex].Selecting terms for a post is...


Platforms: PHP

Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.


Platforms: Windows, Mac, Linux

GeneticsLab is an excellent utility for those ones who are learning Biology, Genetics or any related studies. GeneticsLab automates some operations based on the genetic code, so you won't need to do them manually anymore! These are some of the operations


Platforms: Mac

This program presents the solution to an ode model of the circadian clock, published by Locke et al (2005) 'http://www.nature.com/msb/journal/v1/n1/full/msb4100018.html', in two different ways.A moving plot can show either time series or a limit cycle in 2D or 3D mode, with the user able to...


Platforms: Matlab

mowsterGlossary plugin is designed to give WordPress users an easy way to create, manage and display an online glossary of terms. It has the ability to display the glossary just adding a shortcode to any page or page of the blog. See screenshots for more information.Instructions Manage glossary:...


Platforms: PHP

The Systems Biology Workbench(SBW) is a simple framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32.


Platforms: Windows, Mac, BSD, Linux

Synthetic Biology Software Suite (SynBioSS) is composed of a wiki for biochemical kinetic constants, a graphical interface for simulating synthetic biological pathways, and a simulator that runs on either a desktop or supercomputer.


Platforms: Windows, Mac, BSD, Linux

softerGLOSSARY is an easy to install, easy to configure, easy to use Glossary for use on any website.It features full-text searching with results hi-liting, as well as alphabetic filtering. The current version is completely free to use, modify, redistribute, etc.


Platforms: PHP

PhpGlossary is a script to create a glossary online. Display all entries or by lettres (alphabetical linked list). Search form on words and their definition. Visitors can suggest entries.With administration and validating files. Looks can be changed in the configuration file (css)....


Platforms: PHP

CySBGN adds support to Cytoscape to import, visualize and analyse System Biology Graphical Notation (SBGN) maps.


Platforms: Windows, Mac, Linux

A command-line biochemical network compiler for systems biology.


Platforms: Windows, Mac, Linux

Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.


Platforms: Windows, Mac, Linux

'Plasmidb' is a database management system (RDMS) used to manipulate, view and store molecular biology information rapidly and easily. Editable information includes: constructed plasmids, clones, standard vectors, primers, antibiotics, enzymes and more


Platforms: Windows, Mac, Linux

ScienceDraw lets you create science diagrams by using an extensive collection of science symbols. Easy to create physics, chemistry, mathematics, and biology illustrations for academic papers or education materials. It runs on Mac, Windows and Linux systems. ScienceDraw integrates the...


Platforms: Windows, Windows 8, Windows 7

With the Tag Directory Web Part for Microsoft SharePoint Server 2010 you can render managed metadata taxonomies, right from the term store, as flat A-Z index or glossary of tags as well-known from technical books. The tags are linked to the SharePoint 2010 Tag Profiles or, alternatively, directly...


Platforms: Windows

EcoloSim is a Simulation Framework for simple spatial models in biology and ecology, in Java.Typical problems are behavior of a herd of cattle, growth of microbe cells and other populations.


Platforms: Windows, Mac, Linux

Dynamic Bayesian networks (DBN) are widely applied in modeling various biological networks, including the gene regulatory network. Due to several NP-hardness results on learning static Bayesian network, most methods for learning DBN are heuristic, that employ either local search such as greedy...


Platforms: Matlab

The project aims to extend the PHP scripting language to enable PHP developers to write bioinformatics applications more rapidly than if they had to start from scratch using 'vanilla php'.


Platforms: Windows, Mac, Linux