Mrna Sequence

JMotifFinder is a small graphical utility I wrote to quickly find DNA Motifs such as Primers in huge EMBL Files. If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and mRNA within the source sequence. You can...

Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank sequence database. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex submissions containing long sequences, multiple annotations, gapped...

JMotifFinder is a small, simple, easy to use application designed to offer users a graphical utility to find DNA Motifs such as Primers in huge EMBL Files. If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and...


Platforms: Windows

UML::Sequence is a Perl module to render UML sequence diagrams, often by running the code. SYNOPSIS use UML::Sequence; my $tree = UML::Sequence->new(@methods, @outline, &parse_method); print $tree->build_xml_sequence(Title); To use this package, or see how to use it, see genericseq.pl...


Platforms: *nix

UML::Sequence::JavaSeq is a Perl module for use with genericseq.pl script, works on compiled Java programs. SYNOPSIS genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello > Hello.xml seq2svg.pl Hello.xml > Hello.svg OR genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello |...


Platforms: *nix

Chart::Sequence is a sequence Perl class. SYNOPSIS use Chart::Sequence; my $s = Chart::Sequence->new( Nodes => [qw( A B C )], Messages => [ [ A => B => "Message 1" ], [ B => A => "Ack 1" ], [ B => C => "Message 2" ], ], ); # or # my $s = Chart::Sequence->new( SeqMLInput =>...


Platforms: *nix

Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in...


Platforms: *nix

Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time. SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences). The...


Platforms: Windows

Creates an Excel spreadsheet report about the video clips, audio clips and markers you've used in your edited sequence. The report includes sheets for: Clips, Sequence Markers, Clip Markers, Clip Filters, and Reels. Sequence Clip Reporter takes the tedious work out of creating clip usage reports...


Platforms: Mac

The fastest way to remove duplicates from a sequence depends on some pretty subtle properties of the sequence elements, such as whether they're hashable, and whether they support full comparisons. This script defines the unique() function that tries three methods, from fastest to slowest,...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script contains a function that given a sequence and a number n as parameters, returns the th permutation of the sequence (always as a list).


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script allows you to split up a sequence in same-size (if possible) parts.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Getting min/max in a sequence script allows you to find the min/max value in a sequence as compared to a reference.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This function provides farey sequence, F(n), for any integer n.There's probably a more elegant solution out there, but I couldn't find it. Note: it doesn't prepend (0,1) and append (1,1)...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

It will ask for input the bit stream then generate pseudorandom bit sequence, finally give output as direct sequence spread spectrum.....


Platforms: Matlab

Euler Angles To Quaternion Conversion for six basic sequence of rotations around X(Roll),Y(Pitch) and Z(Yaw) axis.Allowed Sequences: xyz, xzy, yxz, yzx, zxy, zyx.


Platforms: Matlab

alculate the normalized partial energy sequence (NPES) for a given signal vector X.If a particular transform is capable of capturing the key features of a signal in few coefficients, the NPES will approach unity for relatively quickly.Ref: Percival and Walden, Wavelet Methods for Time Series...


Platforms: Matlab

The PRBS are based on 3 to 9 bits memory delays and put out 2^3 -1 to 2^9 -1 binary sequence length. Usage: these generators can be used in process identification as noise source on command signal


Platforms: Matlab

ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence. This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll


Platforms: Windows

Have you ever needed to generate easy to read Quality Reports for your DNA sequencing? Have you ever needed to sort your DNA trace files by quality? Have you ever needed to change the comments tag in your Chromatograms? If so, this software suite is for you. This bundle includes: Mac Sequence...


Platforms: Mac