Mrna Sequence

Creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options. Some bioinformatics features are: - GenBank searching and viewing (linear and circular views) - Multiple alignment of... Platforms: Mac

CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. Bioinformatics features in CLC Sequence Viewer Multiple alignment of DNA, RNA, and... Platforms: Windows

POSA (Perl Objects for Sequence Analysis) provides an easy-to-use perl interface to handling raw ABI sequence trace files. For example: fasta can be extracted, sequence contigs can be build and putative SNPs and SBE primers can be easily generated. Platforms: Windows, Mac, Linux

A fast and reliable tool, written in Java 5, for generating professional UML sequence diagrams from text. Supports actors, con-/destructors, threads, broadcasts, notes, and fragments. Can serve as a Javadoc taglet. Exports PDF, (E)PS, SVG, PNG, ... Platforms: Windows, Mac, Linux

Permutations and combinations are often required in algorithms that do a complete search of the solution space. They are typically rather large so it's best not to compute them entirely but better to lazily generate them.This script uses Python generators to create appropriate generator objects,... Platforms: Windows, Mac, *nix, Python, BSD Solaris

Generators, introduced in Python 2.2, can be used to work with infinite sets. This script is a simple example of a generator that creates the Fibonacci sequence.Running this produces the following result:c:python22>python fib.py1 1 2 3 5 8 13 21 34 Platforms: Windows, Mac, *nix, Python, BSD Solaris

Maximum length sequence assuming distinctvalues = baseVal^powerVal-1 [ms]=mseqSearch(powerVal,baseVal) OUTPUT: ms: generated maximum length sequence, of length basisVal^powerVal-1 such that all values occur with equal frequency=basisVal except zero, which occurs basisVal-1 times INPUT: baseVal:... Platforms: Matlab

Sequence Generator (file ID #24620) has been renamed to CORE - Constraint Randomization Environment. Interface and code structure of v0.91 are explained in this manual.Current development concentrates on these topics:- Performance related issues- Bug fixes (3 known issues)- Improved constraint... Platforms: Matlab

ICE Cafe is a software for viewing sequence chromatgram, and measuring peak intensity of each peaks. ICE Cafe is firstly developed for the purpose of detecting RNA Editing using ICE method. However, ICE Cafe also can be used when one uses conventional RNA Editing detection method in which... Platforms: *nix

App::Session can represents a sequence of multiple events perhaps executed in separate processes. SYNOPSIS # ... official way to get a Session object ... use App; $session = App->context(); $context = $session->session(); # get the session # any of the following named parameters may be... Platforms: *nix

Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db... Platforms: *nix

The STed is the high-performance MIDI sequence editor / Music composer system. It had been working on X680x0 old Japanese personal workstation. The STed was originally developed by Mr. Takayuki "TURBO" Toda. Through many volunteers good office the source code of the STed has been opened. Since... Platforms: *nix

AlignAid is a Perl module that easily run sequence alignments locally or on a cluster. SYNOPSIS use AlignAid; # create an AlignAid object # a single, locally run blast job is the default my $job = AlignAid->new( db => my_blast_db, dir => $dir, fasta => my_query.fa, prog_args => V=20... Platforms: *nix

Bio::Seq is a sequence object, with features. SYNOPSIS # This is the main sequence object in Bioperl # gets a sequence from a file $seqio = Bio::SeqIO->new( -format => embl , -file => myfile.dat); $seqobj = $seqio->next_seq(); # SeqIO can both read and write sequences; see Bio::SeqIO #... Platforms: *nix

PM2V is a library for parallel encoding of a video sequence in MPEG II. PM2V is a project developed by students of the Ecole Nationale Supérieure dElectronique et de Radioelectronique de Bordeaux. ENSERB is a high national school of engineering based in Bordeaux (France). It has three... Platforms: *nix

Bio::AlignIO::bl2seq is a bl2seq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class, as in: use Bio::AlignIO; $in = Bio::AlignIO->new(-file => "inputfilename" , -format => bl2seq); $aln = $in->next_aln(); This object can create... Platforms: *nix

Bio::AlignIO::msf is a Perl module with msf sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class. This object can transform Bio::Align::AlignI objects to and from msf flat file databases. The rest of the documentation details each of... Platforms: *nix

Bio::SeqIO::fastq is a fastq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::SeqIO class. This object can transform Bio::Seq and Bio::Seq::SeqWithQuality objects to and from fastq flat file databases. Fastq is a file format used frequently at... Platforms: *nix

Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =... Platforms: *nix

SeqEntropy was designed as an accessible, easy-to-use and handy assessment instrument of sequence repeats for short read sequencing. Now you can access and make use of this useful tool directly from the Command Line Interface found in your system. Platforms: Windows