Molecular Models

The Ascalaph Designer application was developed for molecular models and simulations. Using this application you can simulate, molecular graphics, optimization, molecular dynamics, quantum chemistry. Features: Molecular graphics Multiple windows Two cameras per model CPK, Wire frame,...

The Nucleic Acid Modeling Tool(NAMOT) is a program to allow users to manipulate molecular models of nucleic acids based on a set of reduced co-ordinates developed at Los Alamos National Laboratory and the Max Planck Institute for Biophysical Chemistry.

The EJS Molecular Dynamics model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated time step. For sufficiently small time steps dt,...


Platforms: Mac

Ascalaph Graphics is a handy, easy-to-use program designed to provide a graphical interface of the system. The program includes the window interface and three-dimensional graphics of molecular models. Ascalaph Graphics shows molecular models in separate windows. Each window has two cameras,...


Platforms: Windows

Hidden Markov models are used to describe the "stepping" behavior of molecular motors, as measured by single-molecule fluorescence techniques. Our HMM implementation is more versatile than the one described by Milescu, et al. Biophys. J. 91:3135-3150 and can be used as a "blind" step detector or...


Platforms: Matlab

The EJS Molecular Dynamics Demonstration model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated Time step. For sufficiently small...


Platforms: Mac

The WCDMA Physical Layer Demo consists of an end-to-end (transmitter-to-receiver) simulation of the Frequency Division Duplex (FDD) Downlink physical layer for several Dedicated Channels (DCH) as specified by the 3GPP standard (Release 99).The current ZIP file includes three different models:...


Platforms: Matlab

This ZIP file contains functions that permits the path loss calculation, using one of the two models of COST231:- Hata model with COST231 extension to the working frequency;- COST231-Walfish/Ikegami model


Platforms: Matlab

This ZIP file contains function that provide simulation of the following models:- Free space loss calculation- Reflection quantization in generic surfaces for vertical and horizontal polarizations- Plane Earth loss calculations, and- Calculation of the Divergence factor in spherical Earth


Platforms: Matlab

This model simulates a CDMA2000 1xRTT Forward link (between Base Station and Mobile Station).In particular, it simulates the Radio Configuration 3 of a Forward Fundamental channel.The block CDMA2k: Initial settings allows you to set different parameters such as data rate, Power ControlSubChannel...


Platforms: Matlab

Hata and COST231-Hata Propagation Models. Two functions and two test scripts (with plots).


Platforms: Matlab

This ZIP file contains 5 Simulink models that were used in the July 2004 MATLAB Digest article "Recommendations for Creating Accurate Linearized Models in Simulink". These models highlight several modeling methodologies that can cause problems with linearization. They are intended to be used with...


Platforms: Matlab

ORMA (Oligonucleotide Retrieving for Molecular Applications) is a series of integrated scripts in Matlab, which performs an accurate search of all the positions able to specifically discriminate one species among homologous ones. ORMA also performs an accurate selection of high-quality...


Platforms: Matlab

The Molecular Dynamics Adiabatic Piston model shows two gas samples within a horizontal cylinder that is divided by an insulated piston that moves without friction. It is a supplemental simulation for an article by Eric Gislason "A close examination of the motion of an adiabatic piston" in the...


Platforms: Mac

gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces.


Platforms: *nix

models is a framework for mapping Python classes to semi-structured data. It is not an ORM because it does not map relational data to Python objects. Instead it helps to define a valuable subset of data in a key/value storage or a document-oriented database and allows to work with only certain...


Platforms: *nix

Critical Business Management Models Software Strategy Development Framework Model, Strategic Management, MBA models and frameworks, business, Management Models Software Strategy Development Framework Model, Strategic Management, MBA models and frameworks, business, Management Models Software...


Platforms: Windows

Enhanced Content Models add new features to the Fedora 3.0 content models.. A more elaborate specification of the data objects. The repository view system. The object creation templates, for creating new objects


Platforms: Windows, Mac, Linux

PFMD performs a Molecular Dynamics simulation of some polarizable fluids at the liquid state by means of a dissociable potential. Supported molecules are H2O (water) and MX3, where M is a metal among Al, Fe, or Ga and X is a halogen among Cl, Br, or I.


Platforms: Windows, Mac, Linux

PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models.


Platforms: Mac, BSD, Linux