Molecular Models

PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone! Platforms: Windows, Mac, BSD, Solaris, Linux

A MATLAB toolbox for time series analysis using state space models. Supports fully interactive model construction with MATLAB objects and efficient Kalman filter backend implemented in c. Platforms: Windows, Mac, Linux

The Python Macromolecular Library (mmLib) is a software toolkit and library of routines for the analysis and manipulation of macromolecular structural models, implemented in the Python programming language. It is accessed via a layered, object-oriented application programming interface, and... Platforms: Windows, Mac, *nix, Python, BSD Solaris

This file contains a set of 3D models with the following characteristics: p: nx3 array of 3D points t: ntx3 array of triangles id. First points flagged as 1. tnorm: ntx3 arrays normals of triangles with outward orientation.You can use this package to test your algorithms.Models can be dowloaded... Platforms: Matlab

The attached script and document help you to remove any Release 11 DSP Blockset blocks from your SimulinkdlT« models. The R11 libraries containing these blocks will no longer be shipped with Signal Processing Blocksetd-OC?D? starting with Release 2007a. If you plan to continue using these... Platforms: Matlab

This submission provides functions (and examples scripts) for estimation, simulation and forecasting of a general Markov Regime Switching Regression. Features of the package:- Support for univariate and multivariate models.- Support of any number of states and any number of explanatory... Platforms: Matlab

- This demo supports R2006a -> R2010aSimulink plant and controller models are used with LEGO's latest high-tech robot (ARM-based LEGO Mindstorms NXT) to illustrate industrial application of Model-Based Design with Production Code Generation. Take note of the model architecture and component... Platforms: Matlab

This project deals with the translation of a Simulink models to SpecC specificationmodels. Matlab is one of the leading softwares in model based and algorithmic designing. SpecC (close to ANSI C) is a high level language which can be implemented on hardware usingSystem on Chip Environment(SCE).... Platforms: Matlab

These files support the webinar titled "Developing Models from Experimental Data Using System Identification Toolbox". The webinar was presented on April 05, 2007 and can be found at:http://www.mathworks.com/wbnr30317For other webinars and demos related to System Identification Toolbox, please... Platforms: Matlab

This submission includes functions and scripts for the estimation and simulation of ACD (autoregressive conditional duration) models. The zip file includes: - Scripts and functions for Estimation of an ACD(q,p) model with exponential or weibull distribution- Scripts and functions for Simulation... Platforms: Matlab

This toolbox was designed to simulate and fit linear state space models. The main literature I used for this particular package is Kim and Nelson (1999). A state space model (without non stochastic coefficients) is given by:y(t)=beta(t)*x(t)'+e(t)... Platforms: Matlab

An essential step in embedded software development, floating- to fixed-point conversion can be tedious, labor-intensive, and error-prone. System engineers frequently design algorithms in floating-point math, usually double-precision. This format represents the ideal algorithm behavior but takes... Platforms: Matlab

Slides, software, and data for the MathWorks webinar, "Using MATLAB to Develop Macroeconomic Models." The file moneydemo.zip contains a file moneydemo.pdf with slides for the webinar and a collection of MATLAB scripts and helper functions to perform a number of macroeconomic analyses. The main... Platforms: Matlab

NanoVis (beta version) allows to visualize any atomistic structure by reading a user defined file. The supported formats are "gen" and "xyz". There are two display modes: normal and "spacefill". In the zip file, with the .m file, there are two examples of structure and a file containing the atoms... Platforms: Matlab

K3DSurf is a program to visualize and manipulate Mathematical models in three, four, five and six dimensions. K3DSurf supports Parametric equations and Isosurfaces. Features Studying mathematical surfaces with K3DSurf include doing: Interactive visualization with mouse events (Right:... Platforms: Mac

The FlightGear Mac OS X is a Mac port of FlightGear, an open-source / free flight simulator with very realistic flight models. FlightGear will give you an opportunity to fly around the world in the comfort of your own home. FlightGear provides scenery data for free so you can fly to/from any... Platforms: Mac

Decision::Markov is a Perl module with markov models for decision analysis. SYNOPSIS use Decision::Markov; $model = new Decision::Markov; $state = $model->AddState("Name",$utility); $error = $model->AddPath($state1,$state2,$probability); $error = $model->Check... Platforms: *nix

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. This project offers a flexible rendering engine and a powerful plugin architecture. The main concept behind Avogadro... Platforms: *nix

MODELbuilder is a scientific application that provides a graphical way to derive models from empirical and simulation data. MODELbuilder is fit to do regression and regression analysis. Whats New in This Release: - This release has a new project file format, data editor, and data import... Platforms: *nix

PlanetGenesis is a Java program designed to produce models of planets and landscapes. A little like Mojoworld but free (as in beer and speech) and no where near as good. PlanetGenesis produces: - 16bit greyscale bitmaps. - Wavefront format objects. - POV-RAY 3.5 mesh2 meshs. - Terragen... Platforms: *nix