Integer Sequence

Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db...

This function provides farey sequence, F(n), for any integer n.There's probably a more elegant solution out there, but I couldn't find it. Note: it doesn't prepend (0,1) and append (1,1)...

Maximum length sequence assuming distinctvalues = baseVal^powerVal-1 [ms]=mseqSearch(powerVal,baseVal) OUTPUT: ms: generated maximum length sequence, of length basisVal^powerVal-1 such that all values occur with equal frequency=basisVal except zero, which occurs basisVal-1 times INPUT: baseVal:...


Platforms: Matlab

Set::Integer::Gapfillers is a Perl module that can fill in the gaps between integer ranges. SYNOPSIS use Set::Integer::Gapfillers; $gf = Set::Integer::Gapfillers->new( lower => -12, upper => 62, sets => [ [ 1, 17 ], # Note: Use comma, not [ 25, 42 ], # range operator (..) [ 44, 50 ],...


Platforms: *nix

UML::Sequence is a Perl module to render UML sequence diagrams, often by running the code. SYNOPSIS use UML::Sequence; my $tree = UML::Sequence->new(@methods, @outline, &parse_method); print $tree->build_xml_sequence(Title); To use this package, or see how to use it, see genericseq.pl...


Platforms: *nix

UML::Sequence::JavaSeq is a Perl module for use with genericseq.pl script, works on compiled Java programs. SYNOPSIS genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello > Hello.xml seq2svg.pl Hello.xml > Hello.svg OR genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello |...


Platforms: *nix

Chart::Sequence is a sequence Perl class. SYNOPSIS use Chart::Sequence; my $s = Chart::Sequence->new( Nodes => [qw( A B C )], Messages => [ [ A => B => "Message 1" ], [ B => A => "Ack 1" ], [ B => C => "Message 2" ], ], ); # or # my $s = Chart::Sequence->new( SeqMLInput =>...


Platforms: *nix

Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in...


Platforms: *nix

An Integer Conversion Application for Noobs was designed using the Java programming language to help you convert numbers to different numbering systems. All you have to do is input the integer number you want converted, select the base system and the program will do the rest.


Platforms: Windows

Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time. SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences). The...


Platforms: Windows

Creates an Excel spreadsheet report about the video clips, audio clips and markers you've used in your edited sequence. The report includes sheets for: Clips, Sequence Markers, Clip Markers, Clip Filters, and Reels. Sequence Clip Reporter takes the tedious work out of creating clip usage reports...


Platforms: Mac

FUNDAMENTALS HUGE INTEGER was specially designed as a FreePascal / Delphi unit that can implement routines and classes for arbitrary size integers. Now you can make use of this handy and accessible instrument to further improve your development process.


Platforms: Windows

Big Integer Library was designed to be a dynamic C++ library that is able to operate on really big integers. The integers can be both signed and unsigned, with all the basic integer operations (as one can do with standard C/C++ primitive integer data types like "int"/"long"/"long long") provided.


Platforms: Windows

The fastest way to remove duplicates from a sequence depends on some pretty subtle properties of the sequence elements, such as whether they're hashable, and whether they support full comparisons. This script defines the unique() function that tries three methods, from fastest to slowest,...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script contains a function that given a sequence and a number n as parameters, returns the th permutation of the sequence (always as a list).


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Generator for integer partitions script uses an iterative procedure to deal with integer partitions.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script contains a quick function to comma separate thousands in an integer or float.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script allows you to split up a sequence in same-size (if possible) parts.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Randomized integer range iterator script iterates over all values of a range in random order.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script initializes an integer set. The constructor accepts an unlimited number of arguments that may either be tuples in the form of (start,stop) where either start or stop may be a number or None to represent maximum minimum in that direction. The range specified by (start,stop) is always...


Platforms: Windows, Mac, *nix, Python, BSD Solaris