Integer Sequence

ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence. This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll Platforms: Windows

The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)... Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64

YAFU or Yet Another Factoring Utility is an interactive Command Line instrument for integer factorization. YAFU has a general purpose function, factor, which tries to optimally reduce a number to its factors using a combination of all of the implemented methods. This method measures the elapsed... Platforms: Windows

Oligomer is a small, simple, Java based application specially designed to help you perform sequence analysis with standard and mixed bases. This tool will also help you find out the physical properties of the sequence, so that you get a complete bio-informatics software. for WindowsAll Platforms: Windows

UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll Platforms: Windows

ClaMS is a handy application specially designed to offer you a sequence composition-based classifier for metagenomic sequences. ClaMS works by capturing signatures of each sequence based on the sequence composition. Each sequence is modeled as a walk in a de Bruijn graph with underlying Markov... Platforms: Windows

Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis is written in Java, and is available for UNIX, Macintosh and... Platforms: Windows, Mac, Linux, Java

QTHextool is a small, simple, easy to use application specially designed to offer you an integer calculator tool. This software uses a simple Stack RPN like user-style. So, if you were looking for an integer calculator, then take QTHextool for a spin and check out its capabilities. Platforms: Windows

ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular... Platforms: Windows

ApneaStaticTrainer is a small, easy to use, handy application specially designed to help you create breath hold sequence for free diving trainings. Basically this tool will help you build O2 and CO2 tables for apnea trainnig and save them as MP3 files. So, if you were looking for a program... Platforms: Windows

KeyPressList is a simple, easy to use tool designed to emulate pressing a sequence of keys to the foreground window. Each line from input file represents a key combination such as ALT-TAB or CONTROL-SHIFT-A or ...each key has a programmable pre-press delay. Platforms: Windows

LSC Editor is designed to be a graphical editor and code generator for Live Sequence Charts (LSCs). The code generated follows a simple execution mechanism. It shows a possible execution path. for WindowsAll Platforms: Windows

Msc-generator is an easy to use, simple tool designed to enable you to draw Message Sequence Charts for telecommunication applications from textual description. Message Sequence Charts (MSCs) are a way of representing entities and message interactions over some time period and are often used in... Platforms: Windows, XP, Windows Vista, 7

Mallard is a handy, Java based application based on the Pintail algorithm designed to work by comparing evolutionary distances between a query and subject sequence over the length of the 16S rRNA gene (small subunit rRNA), by employing a sampling window of specified size, progressing a fixed... Platforms: Windows

In this game you will be presented with a sequence of random objects and you need to memorise them and then repeat the sequence. The number of objects will increase as the level increases. If you picked up the wrong object, then the game is over. Platforms: Windows

BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions. Platforms: Mac

RNNLIB is a recurrent neural network library for sequence learning problems. Applicable to most types of spatiotemporal data, it has proven particularly effective for speech and handwriting recognition. Platforms: Mac

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows. Platforms: Mac

BlastViewer provides an interactive graphical user interface for the analysis of the reports produced by the BLAST sequence database search system. BlastViewer is an easy to use software designed for everyday biological sequence analysis relying on BLAST. It allows an easy visualisation and... Platforms: Mac, Java 1.5 or later

This module introduces an alternative syntax a-la shell pipes for sequence-oriented functions, such as filter, map, etc., via certain classes that override __ror__ method. Platforms: Windows, Mac, *nix, Python, BSD Solaris