Expressed Sequence Tags

IMP is an automated tool for intron-flanking primer design based off of Expressed Sequence Tags (ESTs). It's intended for use in species with limited to no genomic sequence data available.

Ace::Object is a Perl module to manipulate Ace Data Objects. SYNOPSIS # open database connection and get an object use Ace; $db = Ace->connect(-host => beta.crbm.cnrs-mop.fr, -port => 20000100); $sequence = $db->fetch(Sequence => D12345); # Inspect the object $r =...

Thunar Media Tags Plugin (thunar-media-tags-plugin) adds special features for media files to the Thunar File Manager..


Platforms: *nix

PerlPoint::Tags::XML is a PerlPoint tag set used by pp2sdf. SYNOPSIS # declare tags used by pp2sdf use PerlPoint::Tags::XML; This module declares PerlPoint tags used by XML converters. Tag declarations are used by the parser to determine if a used tag is valid, if it needs options, if it...


Platforms: *nix

PerlPoint::Tags::Basic is a Perl module that declares basic PerlPoint tags. SYNOPSIS # declare basic tags use PerlPoint::Tags::Basic; This module declares several basic PerlPoint tags. Tag declarations are used by the parser to determine if a used tag is valid, if it needs options, if it...


Platforms: *nix

PerlPoint::Tags::CPPP is a PerlPoint tag set used by pp2cppp. SYNOPSIS # declare tags used by pp2cppp use PerlPoint::Tags::CPPP; This module declares PerlPoint tags used by pp2cppp. Tag declarations are used by the parser to determine if a used tag is valid, if it needs options, if it...


Platforms: *nix

PerlPoint::Tags::SDF is a PerlPoint tag set used by pp2sdf. SYNOPSIS # declare tags used by pp2sdf use PerlPoint::Tags::SDF; This module declares PerlPoint tags used by pp2sdf. Tag declarations are used by the parser to determine if a used tag is valid, if it needs options, if it needs a...


Platforms: *nix

PerlPoint::Tags is a Perl module that can process PerlPoint tag declarations. SYNOPSIS # declare a tag declaration package package PerlPoint::Tags::New; # declare base "class" use base qw(PerlPoint::Tags); PerlPoint is built a modularized way. The base packages provide parsing and...


Platforms: *nix

UML::Sequence is a Perl module to render UML sequence diagrams, often by running the code. SYNOPSIS use UML::Sequence; my $tree = UML::Sequence->new(@methods, @outline, &parse_method); print $tree->build_xml_sequence(Title); To use this package, or see how to use it, see genericseq.pl...


Platforms: *nix

UML::Sequence::JavaSeq is a Perl module for use with genericseq.pl script, works on compiled Java programs. SYNOPSIS genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello > Hello.xml seq2svg.pl Hello.xml > Hello.svg OR genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello |...


Platforms: *nix

Chart::Sequence is a sequence Perl class. SYNOPSIS use Chart::Sequence; my $s = Chart::Sequence->new( Nodes => [qw( A B C )], Messages => [ [ A => B => "Message 1" ], [ B => A => "Ack 1" ], [ B => C => "Message 2" ], ], ); # or # my $s = Chart::Sequence->new( SeqMLInput =>...


Platforms: *nix

TRASHY is a way to write HTML code using only a few characters, reducing the amount of typing errors, space wasted, helping you to arrange code, and providing an easy way to avoid some common HTML mistakes (like a wrong sequence in closing tags). Why write the attrib height thousands of times...


Platforms: *nix

Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in...


Platforms: *nix

Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time. SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences). The...


Platforms: Windows

Creates an Excel spreadsheet report about the video clips, audio clips and markers you've used in your edited sequence. The report includes sheets for: Clips, Sequence Markers, Clip Markers, Clip Filters, and Reels. Sequence Clip Reporter takes the tedious work out of creating clip usage reports...


Platforms: Mac

Create Emacs TAGS file for Python modules script creates a TAGS file for Python programs, usable with GNU Emacs.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

RepTag provides a role-based rights management, online help, support for CCK textfields, support for multilingual table tags, integration with other modules and a basic API.Installation - Unpack in your modules folder (usually /sites/all/modules/) and enable under Administer > Site Building >...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

Its based on the teori that simple metas with just the product name in them is the best, not necesserily my point of view mind you, but using this you will atleast benefit over no meta tags and/or poorly written manual ones.The meta tags you get with this is exactly the same as the auto fill...


Platforms: Windows, *nix, PHP, BSD

The fastest way to remove duplicates from a sequence depends on some pretty subtle properties of the sequence elements, such as whether they're hashable, and whether they support full comparisons. This script defines the unique() function that tries three methods, from fastest to slowest,...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script contains a function that given a sequence and a number n as parameters, returns the th permutation of the sequence (always as a list).


Platforms: Windows, Mac, *nix, Python, BSD Solaris