Computational

pomsets-gui is a Python module that implements the GUI for workflow management in the cloud. pomsets is a computational workflow management system for your cloud infrastructure. "pomset" is short for "partially-ordered multiset". It is a mathematical model for defining concurrent processes... Platforms: *nix

GC3Pie is a suite of Python classes (and command-line tools built upon them) to aid in submitting and controlling batch jobs to clusters and grid resources seamlessly. GC3Pie aims at providing the building blocks by which Python scripts that combine several applications in a dynamic workflow can... Platforms: *nix

CaPSID (Computational Pathogen Sequence IDentification) is a comprehensive open source platform which integrates a high-performance computational pipeline for pathogen sequence identification and characterization in human genomes and transcriptomes together with a scalable results database and a... Platforms: *nix

Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible high quality rendering and a powerful plugin architecture. Cross-Platform: Molecular... Platforms: *nix

SIAMS S3D is a three-dimensional virtual constructor, which main task is to compose structures. SIAMS S3D composes structures from 3D geometrical objects: dots, lines, planes, spheres, tetrahedrons, polyhedrons and their mixtures. SIAMS S3D was designed first as a scientific oriented...

HydroCalc is a tool for quickly performing meaningful hydraulic engineering calculations from a Windows environment. HydroCalc© offers the following computational capabilities and modules: Open-Channel / Uniform Flow Module; Pipe Flow Module; Riverine Cross Section Geometry Module;... Platforms: Windows

ToBiX is a Morphix-based Linux live CD containing a range of specialist applications for bioinformatics. With this distrubution you just boot from the CD and you have a fully functional LINUX OS distribution with open source applications. Besides using some RAM, ToBiX doesnt touch the host... Platforms: *nix

A Sudoku Solver in C is a console-based Linux program, written in C language, that solves Su Doku puzzles using deductive logic. It will only resort to trial-and-error and backtracking approaches upon exhausting its deductive moves. Puzzles must be of the standard 9x9 variety using the (ASCII)... Platforms: *nix

Biomolecule Toolkit project is an Open Source library for the structural modeling of biological macromolecules. The toolkit provides a C++ interface for common tasks in computational structural biology, to facilitate the development of molecular modeling, design, and analysis tools. Whats New... Platforms: *nix

Growler is a C++-based distributed object and event architecture. It is written in C++, and supports serialization of C++ objects as part of its Remote Method Invocation, Event Channels, and in its Interface Definition Language. Its primary application has been in support of interactive,... Platforms: *nix

HPC Challenge is a high performance benchmark suite. The HPC Challenge consists of basically 7 benchmarks: 1. HPL - the Linpack TPP benchmark which measures the floating point rate of execution for solving a linear system of equations. 2. DGEMM - measures the floating point rate of execution... Platforms: *nix

CCFlauncher is the meta-tool for starting and joining a CCF collaborative computing session. With CCFlauncher you can invite your colleagues/friends to join you in a shared X windows virtual desktop with multiparty audio conferencing, white board, and file sharing in just a few mouse clicks. In... Platforms: *nix

GraphViz is a Perl interface to the GraphViz graphing tool. SYNOPSIS use GraphViz; my $g = GraphViz->new(); $g->add_node(London); $g->add_node(Paris, label => City ofnlurve); $g->add_node(New York); $g->add_edge(London => Paris); $g->add_edge(London => New York, label => Far);... Platforms: *nix

Search::ContextGraph is a Perl module for spreading activation search engine. SYNOPSIS use Search::ContextGraph; my $cg = Search::ContextGraph->new(); # first you add some documents, perhaps all at once... my %docs = ( first => [ elephant, snake ], second => [ camel, pony ], third =>... Platforms: *nix

ACL2 is a programming language in which you can model computer systems and a tool to help you prove properties of those models. ACL2 stands for "A Computational Logic for Applicative Common Lisp". It is an "industrial-strength" version of the NQTHM or Boyer/Moore theorem prover, and has been... Platforms: *nix

The OpenFOAM comes from Open Field Operation and Manipulation, and can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options. The core technology of OpenFOAM is a flexible... Platforms: *nix

FreeJ project is an instrument for realtime manipulation of various video layers combined with live effects. Layers are implemented to mix together webcams, TV, movie files, images and text and can be rendered in various ways. FreeJ can be operated live using hotkeys, also remotely over... Platforms: *nix

The goal of the Parallel Virtual File System (PVFS) Project is to explore the design, implementation, and uses of parallel I/O. PVFS serves as both a platform for parallel I/O research as well as a production file system for the cluster computing community. PVFS is currently targeted at clusters... Platforms: *nix

GO::View is a Perl module that creates a gif or png image for visualizing the GO DAG. This perl module generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the GO::TermFinder perl module created by the Stanford... Platforms: *nix

FreeADSP stands for Free Audio Digital Signals Processor and is a free audio-oriented real-time DSP software. What it does is taking a signal as input, transform it through arbitrary-disposed modules, and then putting the result back to some output (that is, for example, the same thing that... Platforms: *nix