Carrier Protein

An open source implementation of a protein threading program based on the energy functions and techniques originally introduced by Prospect.

ProteinShop is an interactive protein manipulation tool. Users apply their knowledge and intuition to quickly create a set of protein configurations that can be subjected to local or global optimization. More information at http://proteinshop.org

A web based application to track protein related reagents including DNA constructs, cell lines, supes, and purified proteins. Supports creating, tracking, and prioritizing requests for transfections and DNA. Includes search and PDF reports.


Platforms: Windows, Mac, Linux

PANTHER project: software for modeling of protein sequence and function evolution, and tools for applying these data to the analysis of genome data, expression data and coding SNPs. Details available at http://www.pantherdb.org.


Platforms: Windows, Mac, Linux

PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations, providing a platform-independent utility for converting protein files in PDB format to PQR format.


Platforms: Windows, Mac, Linux

This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.


Platforms: Windows, Mac, Linux

PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse PSIMAP.


Platforms: Windows, Mac, Linux

A tool to compare two Protein Sequences and show similarities with the help of dotplot.


Platforms: Windows, Mac, Linux

Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.


Platforms: Windows, Mac, Linux

A library and associated applications for searching for patterns in protein structures and measuring geometric parameters.


Platforms: Windows, Mac, Linux

The Swiss Protein Identification Toolbox (swissPIT) is a project at the Swiss Institute for Bioinformatics (SIB) in Geneva which aims at the development of an automated analysis system to identify proteins using MS and MS/MS based data.


Platforms: Windows, Mac, Linux

It does calculate the shipping cost (within Japan) for Nippon Express (Pelican) carrier. It might work for the current MS2.2 as well, but I have not test it. How to install?Everything is in a folder and the name of the folder is telling you in which folder on the catalog side you have to place...


Platforms: Windows, *nix, PHP, BSD

An Advanced Simple Configuration Delta-Sigma Modulation Three-Phase Inverter Implementing Space Voltage Vector Approach. To miniaturize and enhance the performance of a variety type of switching mode inverters and converters, researchers have developed with great efforts so far. In these...


Platforms: Matlab

Write a program to generate QPSK constant envelope signal waveforms(a)for given rectangular pulse shape. Select the carrier frequency as fc = 6/T.(b)Repeat the experiment given that the signal shape isg (t)= dldu(1-cos2dcdet/T) , 0 d-OC-TA t d-OC-TAT 0 , otherwise


Platforms: Matlab

This file is about BPSK Demodulator. This file will generate the binary output as PSK modulated signal as an input. The input file should be *.mat file. In order to generate the output, you have to know your sampling frequency fs, carrier freaquency, fc and your bitrate.


Platforms: Matlab

CHAPTER 1: FOURIER ANALYSIS1.1 CONTINUOUS-TIME FOURIER SERIES (CTFS)1.2 PROPERTIES OF CTFS 1.2.1 Time-Shifting Property 1.2.2 Frequency-Shifting Property 1.2.3 Modulation Property1.3 CONTINUOUS-TIME FOURIER TRANSFORM (CTFT)1.4 PROPERTIES OF CTFT 1.4.1 Linearity 1.4.2 Conjugate Symmetry 1.4.3 Real...


Platforms: Matlab

The demonstration of n-PSK modulation and demodulation with my own speech, with different value of n and sampling frequency and carrier, n = 2, 4, 8, 16 ,32...


Platforms: Matlab

The model simulates asymmetric modulation which can be observed at second scope by zooming the waveform on time axis. In this modulation technique the reference signal is sampled at positive as well as at negative peak of the carrier and held constant between two sampled points. Three phase...


Platforms: Matlab

NCBI has an implementation of BLAST algorithm on their website at www.ncbi.nlm.nih.gov/BLAST, which is good if you want to query short DNA or protein sequence against various sequence databases. The problem arises when large sequences need to be BLAST'ed against a sequence database or against...


Platforms: Matlab

The model simulates three phase inverter with symmetric PWM modulation in which reference is sampled at the positive peak of the carrier and is held constant till the next positive peak of the carrier appears. The model demonstrates symmetric regular sampling at positive peaks of carrier and...


Platforms: Matlab