Carrier Protein

The FindCore Toolbox (v. 1.0b)David Snyder and Gaetano Montelione, (C) 2010This Matlab Toolbox implements the FindCore algorithm described in Snyder, D.A.; Montelione, G.T. PROTEINS: Struct. Funct. Bioinformaticsm, 2005, 59: 673-86. Clustering algorithms for identifying core atom sets and for...

MOTIFINFO = GIBBSMOTIFSAMPLER(SEQARRAY,MOTIFVECTOR,ALPHABET,OPTIONS) Searches for the motifs in a set of sequences via Gibbs sampling. seqArray is a cell vector of sequence strings. motifVector is a vector of uniformly-spaced motif widths you wish to optimize. The program iterates over these...

PDBRead is a function that will read a Protein Data Bank file into a MATLAB structure.PDB_struct = PDBRead(filename) reads the file corresponding to filename and stores the information contained in this file in the PDB_struct. e.g. PDB_struct = PDBRead('PDBSilk.txt')The file that is being read by...


Platforms: Matlab

It can be used to measure the total concentration of carbohydrate, protein, and lipid contents from solid wastes.The procedure was formulated to generate the detailed input required for the International Water Association (London, United Kingdom) Anaerobic Digestion Model number 1 (IWA-ADM1).The...


Platforms: Matlab

Tracking information is probably the most important thing the customer is interested in seeing after an order is placed! The customer wants to know "Where's my stuff?", and you don't want him bugging you about it.This module lets your customer (or you, the admin) track shipped packages. It uses a...


Platforms: PHP

Admin SMS Alert sends a SMS Message (Text) to the provided cell phone on the chosen carrier for selected alerts. Alert examples are for comments awaiting approval/spam, approved/disapproved comments, and new pingbacks.ASMSA is compatible with most US, Canada, and several other countries' cell...


Platforms: PHP

Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid...


Platforms: Mac

Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure We present Voroprot, an interactive cross-platform software tool that provides a unique set of capabilities for exploring geomeric features of protein structure. Voroprot allows...


Platforms: Mac

A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.


Platforms: Mac

The Ramachandran Plot Explorer really offers something new. The Ramachandran Plot Explorer is designed to make it easy to examine the conformation of a polypeptide - through the interactive Ramachandran plot (?Ya* -?Y? angles) and ?Ya*?-angle tool. Simply click on a residue, then drag the marker...


Platforms: Mac

ProDy is a Python package designed for protein structural dynamics analysis. ProDy is developed by Ahmet Bakan and licensed under the GPLv3. New features and functions are constantly being added to ProDy. The following are the main features that are present and working fine: Protein structure...


Platforms: Mac

For this ProfDistS provides a phylogenetic framework that uses individual RNA secondary structures in reconstructing phylogenies based on sequence-structure alignments - using Profile Neighbor Joining (PNJ) with manual or iterative and automatic profile definition. Moreover, ProfDistS can deal...


Platforms: Mac

A Tool that manages Pathway Retrieval, Visualization and Analysis. Import a Gene or Protein Set from any Excel file. Find matching Pathways from KEGG. Integrate, visualze and analyze your Data in Seconds with interactive Force-directed Layout .


Platforms: Mac

Biomatters was founded on the principle of creating software that can be used by all researchers in their daily work. Our technology converts raw data into meaningful, visual information, simplifying research and ultimately improving efficiency. Biomatters???*a*? flagship software packages are:...


Platforms: *nix

Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.


Platforms: *nix

CUDASW++ software is a public open source software for Smith-Waterman protein database searches on Graphics Processing Units with CUDA. This software have been added to the NVIDIA Tesla Bio Workbench (http://www.nvidia.com/object/swplusplus_on_tesla.html


Platforms: *nix

MSAProbs is an open-source protein multiple sequence ailgnment algorithm, achieving the stastistically highest alignment accuracy on popular benchmarks: BALIBASE, PREFAB, SABMARK, OXBENCH, compared to ClustalW, MAFFT, MUSCLE, ProbCons and Probalign.


Platforms: *nix

django-compound-field is a Django add-on that allows you to define compound fields, e.g. {{{ class AddressField(CompoundField): phone = models.CharField(max_length=30) mobile = models.CharField(max_length=30) fax = models.CharField(max_length=30) email = models.EmailField() }}} Compound...


Platforms: *nix

APBSmem is a Java-based graphical user interface for Poisson-Boltzmann electrostatics calculations at the membrane. APBS version 1.2.0 or later is required. Features . Protein solvation . Ion solvation . Gating charge calculations


Platforms: *nix

HtmlCssInclude converts css into inline style html for mobile. font size is changed by mobile carrier (docomo, au, softbank). when mobile is VGA, image size is changed.


Platforms: *nix