Sequences

This m-file generate Gold Sequences of length 31 by taking the modulo-2 sum of two m-sequence generators.

[cg, psg] = crandn(rgau,m)Generate correlated Gaussian sequences by Fourier synthesis.Input parameters:rgau = correlation function - length n/2m = number of realisationsOutput:cg = m x n matrix containing m sequences of n correlated variates from a zero mean, unit variance normal distributionpsg...

Computes by using the FFT (fast Fourier transform) algorithm the covolution of two discrete sequences.


Platforms: Matlab

Lempel Ziv algorithm implementation for binary sequences. It has also a test file for unit test


Platforms: Matlab

This module allows creating multiple repeats/duplicates/clones of nodes based on date sequences. The date sequences are created with the Date Repeat module (part of Date). The nodes must have a CCK Date field, which in the new nodes created by Node Repeat are populated with dates from the...


Platforms: PHP

Neat Video Plug-in for After Effects (Mac) is a video noise reduction plug-in designed to reduce noise and grain in digital video sequences produced by digital video cameras, camcorders, TV-tuners, digitizers of film or analog video. Neat Video plug-in for After Effects (Mac) supports Abobe After...


Platforms: Mac

Virusbanker is a MySQL database of virus sequences and alignments that is accessed via a Java program. To use the database you need to download the Java program. The program creates an interface with three spreadsheets and a selection menu. We describe the process of setting up VirusBanker below;...


Platforms: Mac

alignlib is a C++ library for computing and manipulating sequence alignments of protein sequences. Most of the functions and classes are exported to python thus permitting easy scripting of complex tasks.


Platforms: Mac

Gepard (German: "cheetah", Backronym for "GEnome PAir - Rapid Dotter") allows the calculation of dotplots even for large sequences like chromosomes or bacterial genomes.


Platforms: Mac

Recco analyzes alignments of sequences that evolved subject to recombination and mutation. The analysis provides evidence as to whether a dataset contains recombination, which sequence is a recombinant and where the recombination breakpoints are. The analysis is based on explaining one sequence...


Platforms: Mac

We have made major revisions to the software, incorporating the ability to compare multiple sequences to a reference sequence. Instead of a traditional alignment, the software finds islands of identical DNA, and shows the mapping of these "Anchor Points" between the compared sequences.


Platforms: Mac

miRpp - A Plant microRNA Precursor Prediction Tool for Small RNA Reads on Genome Sequences


Platforms: Mac

In this game you will be shown sequences of numbers and each time you will be given a few seconds the remember the sequence. After the time is over you need to repeat that sequence. You lost if you any of the numbers is wrong.


Platforms: Mac

JDSA is a Java program that will degenerately search DNA sequences. This program searches sequences for multiple nucleotides at a given position (positional degeneracy), limited overall sequence accuracy (group degeneracy) or variable spacing between multiple DNA sequences (spacing degeneracy)....


Platforms: Mac

ProteinMusic is a Java program converting DNA sequences into music. The original idea for this project came from R. D. King at the University of Wales, Aberystwyth and C. G Angus from the Shamen (King, R.D. & Angus, C.G. (1996)).


Platforms: Mac

The Sequencing QC report provides statistics about base distribution, quality, Kmer overrepresentation and duplicated sequences. It can be used to inspect and verify the quality of a high-throughput sequencing data set. The inspiration for this tool comes from the fastqc tool.


Platforms: Mac

t2prhd is a Perl script which generates simple diagrams that highlight relationships of sequence repeats detected by using a profile HMM in two sequences. Homology relations are identified on the basis of the phylogeny of repeats.


Platforms: *nix

django-ticketing also supports multiple sequences, which allows one to have sequences of tickets that are independent. This means you could have a sequence for users, a sequence for posts and a sequence for widgets. This is configured through your Django settings configuration.


Platforms: *nix

Fast5 is a probabilistic file format for the storage of nucleotide and protein sequences based on hdf5.


Platforms: *nix

The MPEG SoftEngine gives you the ability to encode digital audio and video sequences according to the ISO-MPEG1- and MPEG-2-standards. SoftEngine reads digital video / audio files in AVI and WAVE formats as data source and compresses and organizes them with a comfortable easy-to-use graphical...