Sequence Analysis
Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in...
Platforms: *nix
License: Freeware | Size: 2.3 MB | Download (122): Sequence Analysis Download |
POSA (Perl Objects for Sequence Analysis) provides an easy-to-use perl interface to handling raw ABI sequence trace files. For example: fasta can be extracted, sequence contigs can be build and putative SNPs and SBE primers can be easily generated.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 3.65 MB | Download (45): Perl Objects for Sequence Analysis Download |
Gene Inspector is a unique combination of a versatile electronic laboratory research notebook and a comprehensive sequence analysis product. Using GI, the user has the ability to define an entire 'suite of analyses' that can be performed each time they (or anyone in the lab) has a new sequence,...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Download (102): Gene Inspector Download |
Sequencher is the industry standard software for DNA sequence analysis. It works with all automated sequencers and is widely known for its lightning-fast contig assembly, short learning curve, user-friendly editing tools, and superb technical support. First released almost 15 years ago,...
Platforms: Mac
License: Demo | Cost: $0.00 USD | Size: 15.7 MB | Download (233): Sequencher Download |
Oligomer is a small, simple, Java based application specially designed to help you perform sequence analysis with standard and mixed bases.
This tool will also help you find out the physical properties of the sequence, so that you get a complete bio-informatics software.
for WindowsAll
Platforms: Windows
License: Freeware | Download (382): Oligomer Download |
Jnomics is a collection of cloud-scale DNA sequence analysis tools
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 706.56 KB | Download (51): Jnomics Download |
ParsInsert efficiently produces both a phylogenetic tree and taxonomic classification for sequences for microbial community sequence analysis. This is a C++ implementation of the Parsimonious Insertion algorithm.
Platforms: *nix
License: Freeware | Size: 5.01 MB | Download (38): ParsInsert Download |
MacVector... Researchers who want a simple but comprehensive desktop sequence analysis application continually turn to MacVector, the leading sequence analysis package for the Macintosh. MacVector provides sequence editing, primer design, Internet database searches, protein analysis, sequence...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Download (126): MacVector Download |
CodonCode Aligner is a leading software program for DNA sequence analysis. Widely used in evolution research, biogeography, and other biomedical fields, it offers many features not found in competing programs, including the ability to compare contigs with ClustalW and muscle, trace sharpening,...
Platforms: Mac
License: Demo | Cost: $960.00 USD | Size: 19.9 MB | Download (58): CodonCode Aligner Download |
DNADynamo sequence analysis software is easy to use. It's user interface is focused on your DNA sequences, proteins and restriction enzyme sites. Sequencing data, oligonucleotide sequences, DNA/Protein annotations and notes can be added to each sequence. Information is accessible whenever it is...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 10.92 MB | Download (42): DNADynamo Download |
biOpen is a new and unique DNA and protein sequence analysis and structure visualization software based on dynamic integration of analysis tools. This evaluation version includes the interactive multiple trace view, the Documentation window, DNA/RNA analysis tools (including Contig Assembly),...
Platforms: Mac
License: Demo | Cost: $0.00 USD | Download (109): biOpen Download |
The goal of BioX is to bring easy-to-use sequence analysis to Mac-using biologists. It features graphical editors for sequences and multiple alignments, and supports opening and saving of many different sequence file formats. Analysis functions currently include searching for primers, restriction...
Platforms: Mac
License: Freeware | Download (126): BioX Download |
CLC RNA Workbench - A bioinformatics program for advanced RNA sequence analysis. All analyses are fully integrated in one single, user-friendly, and intuitive software application. Some analyses are:Secondary structure predictionGraphical view and editing of secondary structureTabular view of...
Platforms: Mac
License: Demo | Cost: $0.00 USD | Download (103): CLC RNA Workbench Download |
An automatically-updating library of genomic and genetic data; that provides a fully integrated, visually-advanced toolset for
- Sequence alignment and phylogenetics
- Sequence analysis, Contig assembly,
- primers, restriction analysis
- BLAST. Protein structure viewing, NCBI, UniProt, Pubmed...
Platforms: Mac
License: Freeware | Size: 77 MB | Download (58): Geneious for Mac OS Download |
A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence...
Platforms: Mac
License: Freeware | Size: 18.6 MB | Download (46): Serial Cloner for Mac OS Download |
A bioinformatics program for advanced RNA sequence analysis. All analyses are fully integrated in one single, user-friendly, and intuitive software application.
Some analyses are:
- Secondary structure prediction
- Graphical view and editing of secondary structure
- Tabular view of structures...
Platforms: Mac
License: Freeware | Size: 35 MB | Download (51): CLC RNA Workbench for Mac OS Download |
GATA is a graphic alignment tool for comparative sequence analysis. It makes use of BLAST to graphically align two DNA sequences, creating box- line- box representations of window scored local alignments. GATA also displays extensive GFF gene annotation.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 10.35 MB | Download (44): GATA Download |
IISA - Intelligent Interface to Sequence Analysis is an expert system for biological sequence analysis using Bioperl and Prolog.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 17.53 KB | Download (49): IISA Download |
pygr is a bioinformatics toolkit for sequence analysis and comparative genomics. pygr is highly scalable (e.g. one can easily query multi-genome alignments) and easy to use. Please see our new project page and wiki at http://code.google.com/p/pygr.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 1.1 MB | Download (47): pygr Download |
wEMBOSS is a web interface for the EMBOSS software package for biological sequence analysis. Under wEMBOSS each user has a private workspace where he can organize his work by creating projects and save results for later easy recovery and review.
Platforms: *nix
License: Freeware | Size: 1.16 MB | Download (37): wEMBOSS Download |