Sequence Analysis
Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time.
SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences).
The...
Platforms: Windows
License: Freeware | Download (471): Short Sequence Location Mapper Download |
BlastViewer provides an interactive graphical user interface for the analysis of the reports produced by the BLAST sequence database search system. BlastViewer is an easy to use software designed for everyday biological sequence analysis relying on BLAST. It allows an easy visualisation and...
Platforms: Mac, Java 1.5 or later
License: Freeware | Size: 7.5 MB | Download (65): BlastViewer Download |
The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...
Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64
License: Freeware | Download (466): FastPCR Professional Download |
SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools. Background Deluged by the rate and complexity of completed genomic sequences, the need to align longer sequences becomes more urgent, and many more tools have thus been developed. In the...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 3.92 MB | Download (42): SinicView Download |
Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function prediction, sequences, database references (GeneOntology,...
Platforms: Windows
License: Demo | Cost: $1229.00 USD | Size: 2.3 MB | Download (142): GENOM 2005 Download |
NoeClone Version 3.0 Advanced Edition is a full-fledged electronic virtual cloning system that allows you to design cloning projects, simulate cloning processes, and generate cloning flowcharts for clarity and bookkeeping. Many advanced cloning and sequence analysis functions are provided to give...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 46.19 MB | Download (39): NoeClone Advanced Edition Download |
EMBOSS is "The European Molecular Biology Open Software Suite", it is a free Open Source software analysis package specially developed for the needs of the molecular biology user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of...
Platforms: Most OSs
License: Freeware | Size: 17.6 MB | Download (1202): EMBOSS Download |
Gene Construction KitO brings intuitive productivity to the molecular biology researcher's MAC, allowing effortless manipulation of DNA - either graphically or as sequence text. GCK eliminates tedious examination of sequence data by automatically identifying ORF's and silent mutations, and easily...
Platforms: Mac
License: Demo | Cost: $0.00 USD | Download (123): GCK Download |
QDA Miner is an easy-to-use mixed-model qualitative data analysis software package for coding, annotating, retrieving and analyzing small and large collections of documents and images.
QDA Miner may be used to analyze interview or focus-group transcripts, legal documents, journal articles,...
Platforms: Windows
License: Shareware | Cost: $1895.00 USD | Size: 22.48 MB | Download (416): QDA Miner Download |
BioJava is a tool that includes objects for manipulating biological sequences and file parsers.
It also features a DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines including a dynamic...
Platforms: Windows
License: Freeware | Download (55): BioJava Download |
Seqlib is a Python module and application package for population genetics (and more). It allows processing, analyzing and simulating biological sequences. It is specifically designed for automated large-scale sequence analysis. Main features: * Fasta-centered input and output, format...
Platforms: Mac
License: Freeware | Size: 2.7 MB | Download (37): SEQLIB Download |
EnzymeX is a program for molecular biologists, developed to help you determine which restriction enzymes you should use to cut your DNA of interest. It now is a complete DNA sequence analysis and editing program, which contains powerful and unique features and is above all user friendly. Never...
Platforms: Mac
License: Freeware | Download (124): EnzymeX Download |
Have you ever gotten frustrated with your DNA sequence analysis program because it didn't do a few things that you needed it to? Now, if you can code (or convince someone else to code for you), you can make 4Peaks go that extra distance for you. By making a plugin, you can get 4Peaks to send your...
Platforms: Mac
License: Freeware | Download (112): 4Peaks Plugin SDK Download |
The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities. GCK was named the "Best Plasmid...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Download (200): Gene Construction Kit Download |
WinBlast is a handy, easy to use application specially designed to offer you a graphical front-end for NCBI BLAST.
Platforms: Windows
License: Freeware | Size: 1024 KB | Download (495): WinBlast Download |
Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,...
Platforms: Windows
License: Shareware | Cost: $249.00 USD | Size: 30 MB | Download (433): Geneious PRO Download |
Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,...
Platforms: Windows
License: Shareware | Cost: $249.00 USD | Size: 30 MB | Download (505): Geneious PRO x64 Download |
Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry.
Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...
Platforms: Windows
License: Freeware | Size: 39.6 MB | Download (468): Geneious Basic Download |
Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry.
Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...
Platforms: Windows
License: Freeware | Size: 39.6 MB | Download (504): Geneious Basic x64 Download |
Seqwog is a small, command prompt application specially designed to help you find frequent sequences without gaps in their occurrences.
That is, the items of the frequent subsequences must always be consecutive in the underlying transactions. There must not be other items interspersed between...
Platforms: Windows
License: Freeware | Download (450): Seqwog Download |