Protein Analysis

The JPAT API is a Java API designed to provide developers with tools for calculating the results of protease digestion of proteins and ms/ms fragmentation of peptides. JPAT also contains GUI components for displaying the results. JPAT is a nice way to get

TMRPres2D or TransMembrane protein Re-Presentation in 2 Dimensions for long, is a small, easy to use application designed to automate the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and...

ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of...


Platforms: *nix

Gene Inspector is a unique combination of a versatile electronic laboratory research notebook and a comprehensive sequence analysis product. Using GI, the user has the ability to define an entire 'suite of analyses' that can be performed each time they (or anyone in the lab) has a new sequence,...


Platforms: Mac

MacVector... Researchers who want a simple but comprehensive desktop sequence analysis application continually turn to MacVector, the leading sequence analysis package for the Macintosh. MacVector provides sequence editing, primer design, Internet database searches, protein analysis, sequence...


Platforms: Mac

biOpen is a new and unique DNA and protein sequence analysis and structure visualization software based on dynamic integration of analysis tools. This evaluation version includes the interactive multiple trace view, the Documentation window, DNA/RNA analysis tools (including Contig Assembly),...


Platforms: Mac

Gene Construction KitO brings intuitive productivity to the molecular biology researcher's MAC, allowing effortless manipulation of DNA - either graphically or as sequence text. GCK eliminates tedious examination of sequence data by automatically identifying ORF's and silent mutations, and easily...


Platforms: Mac

The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities. GCK was named the "Best Plasmid...


Platforms: Mac

CLC Protein Workbench is a scientific application for bioinformation, aimed at the advanced analysis of protein sequences. This program offers you a really wide range of analyses, all of them integrated in the same interface, which is very friendly and accessible to all users.The options and...


Platforms: Windows

PROMPT is a system for retrieval, analysis, mapping and comparison of protein sets. It allows easy mapping of different types of sequence identifiers, automatic data retrieval and integration, many analysis and comparison algorithms, and a full-featured GUI application. Exhaustive statistical...


Platforms: *nix

User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files


Platforms: Windows, Mac, Linux

HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures. Features . Protein Structure Quality...


Platforms: *nix

Two programs for the tolerance analysis of linear, 2D and 3D dimensional chains 1) Tolerance analysis of linear dimensional chains. The program is designed for tolerance analysis of linear (1D) dimensional chains. The program solves the following problems: - Tolerance analysis, synthesis and...


Platforms: Windows

Digital image processing, analysis, and manipulation; elementary computer vision. Pixcavator provides new image analysis capabilities to scientists and researchers. With a single click you can capture the contours of all objects in the image and produce a spreadsheet with each objects locations...


Platforms: Windows

Stock Price Analysis provide a free web based stock price analysis module. The easy to use interface incorporates Fundamental Analysis to calculate: Fair Value stock price; comparative stock Value; profit Target sell price; Stop Loss sell price; Price Earnings Ratio (PE) for Fair Value and Buy...


Platforms: Windows, Mac

Analysis Studio provides the researcher a fast reliable way to create and manage data mining projects and includes automated methods for gaining a high level of accuracy and model stability. The software is designed for supporting crucial decisions in marketing, web mining, credit scoring,...


Platforms: Windows

Business Analysis Tool Desktop is a Business Intelligence software for data visualization and OLAP reporting. You can analyze your data by building pivot tables, charts, treemaps, scatter diagrams, filtering/sorting/searching for patterns, etc. Product features: - Reports are generated...


Platforms: Windows

BASE is the Basic Analysis and Security Engine. It is based on the code from the Analysis Console for Intrusion Databases (ACID) project. This application provides a web front-end to query and analyze the alerts coming from a SNORT IDS system. BASE is a web interface to perform analysis of...


Platforms: *nix

STOCK ANALYSIS: Comprehensive Fundamental Analysis of publicly traded companies. Graphical display of data. View up to 10 years of Sales, EPS, Price, Return, Retention Ratio, ROE, Sustainable Growth, Equity, Asset and Revenue Efficiencies. Calculate Risk vs. Reward ratio. Check if current price...


Platforms: *nix

Market Analysis System (MAS) is an open-source software application that provides tools for analysis of financial markets using technical analysis. Market Analysis System provides facilities for stock charting and futures charting, including price, volume, and a wide range of technical analysis...


Platforms: *nix