Ontologies

Altova SemanticWorks 2012 is the ground-breaking visual RDF/OWL editor for the Semantic Web from the creators of XMLSpy. Graphically design and edit RDF instance documents, RDF Schema (RDFS) vocabularies, and OWL ontologies then output the format of your choice. SemanticWorks streamlines the job... Platforms: Windows

FluentEditor for OWL is comprehensive tool for editing and manipulating complex ontologies using Controlled Natural Language. Fluent editor provides alternative to XML-based OWL editors that is better suitable for human users. It's main feature is using Controlled English as a knowledge modeling... Platforms: Windows

The SMW OntologyEditor is an extension of SemanticMediaWiki and has been developed as part of the ACTIVE project in order to enable the development of lightweight ontologies and to provide knowledge repair algorithms. Platforms: PHP

OntoCreator is a tool able to automatically create synthetic ontologies according to user given adjustable specifications with respect to size, distribution of certain language construct and expressivity. The current version will generate ontologies according to the ?*a*ffnet einen externen Link... Platforms: Mac

Key Concepts Extraction was specially developed in order to help you perform key-concept extractions from ontologies. In order to use the KCE API you have to import the available JAR packages into your project. The packages you have to import are: · kce.jar · taxonomy.jar ·... Platforms: Windows

Apolda, also known as Automated Processing of Ontologies with Lexical Denotations for Annotation was built as a plugin for GATE. The Apolda processing resource (PR) annotates a document like a gazetteer, but takes the terms from an (OWL) ontology rather than from a list. Apolda searches the... Platforms: Windows

SimPack is specially developed for the research of similarity between concepts in ontologies or ontologies as a whole. Possible other application areas of SimPack include · the investigation of similarity between software source code. For instance to detect changes between classes of... Platforms: Windows

FluentEditor for OWL is comprehensive tool for editing and manipulating complex ontologies using Controlled Natural Language. Fluent editor provides alternative to XML-based OWL editors that is better suitable for human users. It's main feature is using Controlled English as a knowledge... Platforms: Windows

Jastor is a Java code generator that generates Beans from Web Ontologies (OWL) enabling convenient, type safe access and eventing of RDF stored in a Jena model. Jastor uses Eclipses Java Emitter Templates (JET). Platforms: Windows, Mac, Linux

KADMOS provides a lightweight API for alignment of OWL 2 ontologies. It is based on the OWL API v3. Platforms: Windows, Mac, Linux

OntoCardio is an initiative to build ontologies for the legacy Cardio Database (Resource of bioinformation on cardiovascular diseases). SMI's Protege and its OWL plug-in has been adopted as the ontology construction and programming framework. Platforms: Windows, Mac, Linux

OntoExtractor is a way of building ontologies that proceeds in a bottom-up fashion, defining concepts as clusters of concrete XML objects. From a set of XML documents the application generates a taxonomy. OntoExtractor has been developed so far by the Kn Platforms: Windows, Mac, Linux

The ONTO-SPARQL library contains sparql-queries for loading OBO-ontologies, and for browsing and searching through them. The results of the queries are returned in XML or a HTML-interface. They can be used by end-users and programmers. Platforms: Windows, Mac, Linux

OWLViz4U (OWLViz for Unicode) is an extension of OWLViz for supporting Unicode based ontologies, which is an OWL visuliazation tool used with the Protege OWL plugin. OWLViz4U is part of the W3China Open Source Project (http://www.w3china.org). Platforms: Windows, Mac, Linux

Up to now, most ontologies are created manually, which is very time-expensive. The goal is it, to produce ontologies automatically via XSLT, which fit as good as possible to a given XML-file resp. XML-Schema-file. Platforms: Windows, Mac, Linux

OntoUML Editor is a model-based graphical editor that supports the creation of conceptual models and domain ontologies in a philosophically and cognitively well-founded modeling language named OntoUML, which is based on the Unified Foundational Ontology (UFO). The editor is designed in a way... Platforms: Mac

Each TS was tested for functional enrichment using annotation obtained from numerous ontologies or curated databases (Gene Ontology, KEGG, BioCarta, Swiss-Prot, BBID, SMART, NIH Genetic Association DB, COG/KOG, TargetScan, PicTar, TFBSConserved,...). Platforms: Mac

ISA Creator Configurator is a standalone Java application for ???*?power users???*a*? (e.g., community curators) to regulate (i.e., declaring certain fields mandatory or mandating the use of certain ontologies) the fields displayed in the ISAcreator. Here are some key features of "ISA Creator... Platforms: Mac

Converter from CSV file to a multilingual IMS VDEX voacabulary XML file. VDEX is a very good standardized format for multilingual vocabularies, ontologies, etc. It just sucks to create its XML manually. There is poor editor support. But everybody has Excel, well, but almost everybody knows how... Platforms: *nix

Bio::Ontology::Relationship is a relationship for an ontology. SYNOPSIS $rel = Bio::Ontology::Relationship->new( -identifier => "16847", -subject_term => $subj, -object_term => $obj, -predicate_term => $pred ); This is a basic implementation of Bio::Ontology::RelationshipI. The... Platforms: *nix