Genome Visualization

GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard... Platforms: Windows

Gendraw was specially developed to aid you in drawing genome graphs. It has multiple graphic elements to represent different types of contents. The contents for drawing can be imported from a standard Genbank or EMBL flatfile, or manually given by the user. Platforms: Windows

The BLAST Ring Image Generator (BRIG) is a cross-platform JAVA application, it has a graphical user interface, which takes the user step-by-step through the configuration of a genome circular visualization. Platforms: Mac

SVDetect is a application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies This tool aims to identifying structural variations with both clustering and... Platforms: *nix

The Integrated Genome Browser (IGB, pronounced Ig-Bee) is an interactive, zoomable, scrollable software program you can use to visualize and explore genome-scale data sets, such as tiling array data, next-generation sequencing results, genome annotations, microarray designs, and the sequence... Platforms: Windows

XMMS Root Visualization Plugin is a little XMMS plugin wich can draw a spectrum analyzer directly to the background (root window) of X. Whats New in This Release: - changed code to get rid of gcc 4 compiler warnings - added alpha channel to all colors - rewrote configuration backend -... Platforms: *nix

The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006. Platforms: Linux

iMethy is a handy, easy to use genome-wide DNA methylation analysis and visualization application based on next generation sequencing. Firstly, it holds the command-line pipeline to align the bisulfite-treated short read, identify the methylcytosine at CG/CHG/CHH sites, detect the methylation... Platforms: Windows

Visualization in Geometric Knot Theory is a small, Java based application specially designed to help you create different interactive visualizations in geometric knot theory. Most of the software's options are available via the context menu of corresponding components and their toolbars and... Platforms: Windows

The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006. Platforms: Linux

The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. Kitware, whose team created and... Platforms: Windows, Mac, Linux

Power Engineering Visualization VC++ Source Code Solutions UCanCode Softwareis a world-class Power Engineering Solutions provider with an established reputation for customer responsiveness and technical expertise. Our solutions stand behind thousands of T&D projects in over 40 countries around... Platforms: Windows

PMN Solution Visualization .NET/VC++ Source Code Kit -- Build Advanced Diagrams and Dashboards for Business Process Management (BPM) in minutes Business Process Modeling (BPM) is typically performed by business analysts who are seeking to improve process efficiency. Process oriented... Platforms: Windows

The code in this submission describes how to download and install the Visualization Toolkit (VTK, www.vtk.org) and create a MATLAB mex file to interface with it.An example C++ mex file and code to build and run the mex file are included. Platforms: Matlab

Alternate checkerboard visualization of 2 RGB images out=checkvis(im1, im2, sqsize) im1, im2 ... RGB source images, MUST have same size! sqsize ... square side size (optional agument, default is 32pixels) Platforms: Matlab

This is the data set you will need to participate in the Data Visualization contest. For more information, refer to the rules posted here. http://www.mathworks.com/contest/datavis/rules.htmlYou can also follow the latest announcements on the contest blog here. http://blogs.mathworks.com/contest/ Platforms: Matlab

In this code, I show how to create a clean architecture for a volume visualization engine and one example GUI that uses it. I take advantage of exporting nested functions so the GUI programmer can manipulate the visualization in ways that can be customized for specific applications.Scott, Mike... Platforms: Matlab

The KineticaRT .NET Bitmap Visualization Control is fast, easy to configure and supports live update (state changes are transferred automatically to/from the connected channel) and is ideal for mimic diagrams and value indicators. It is a member of the KineticaRT family of components, which can... Platforms: Windows

KineticaRT .NET Multi-Needle 2D XY Graph Visualization Component, in common with other KineticaRT components, is easy to configure and supports live update (state changes are transferred automatically to/from the connected channel). It is a member of the KineticaRT family of components, which can... Platforms: Windows

Open Visualization Data Explorer is a visualization framework that gives users the ability to apply advanced visualization and analysis techniques to their data. These techniques can be applied to help users gain new insights into data from applications in a wide variety of fields including... Platforms: All