Gene
GENE Graph Export Engine is an advanced XML exporter. GENE Graph Export Engine is a complex convertor/framework for multi-namespace XML transforming and exporting. It is able to convert various XML types including SVG, DocBook, MathML, XSL-FO, and their combinations into a wide area of output...
Platforms: *nix
License: Freeware | Size: 1.1 MB | Download (96): GENE Graph Export Engine Download |
This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent,...
Platforms: Windows, Mac, *nix, Perl, BSD Solaris
License: Freeware | Download (65): Perl Entrez Gene Parser Download |
Gene Inspector is a unique combination of a versatile electronic laboratory research notebook and a comprehensive sequence analysis product. Using GI, the user has the ability to define an entire 'suite of analyses' that can be performed each time they (or anyone in the lab) has a new sequence,...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Download (102): Gene Inspector Download |
The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities. GCK was named the "Best Plasmid...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Download (200): Gene Construction Kit Download |
Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 12.65 MB | Download (43): Conrad CRF Engine & Gene Caller Download |
Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 113.65 KB | Download (53): Disease Gene Profiler Download |
Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 35.3 KB | Download (45): Entrez Gene Parser in Perl Download |
The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 44.5 MB | Download (47): Gene Ontology Download |
Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of...
Platforms: Windows, Mac, Linux
License: Freeware | Size: 60.89 MB | Download (45): Gene-Environment iNteraction Simulator 2 Download |
GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 3.62 MB | Download (55): GRaPe - Gene Reaction Protein Builder Download |
LiveGMS is a PHP/MySQL driven gene editor for the game Creatures 3 / Docking Station. It provides a platform independent online editor with most features other binary genetics editors have.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 1.83 MB | Download (50): Live gene manipulation system (LiveGMS) Download |
a simple function that returns a colormap, C, for visualizing gene expression. C is just a N x 3 matrix [R G B] describing the range of color values.example usage: C = exp_colormap('blue-yellow',64); colormap(C);called without any arguments, it returns a [3 x 64] green-red colormap.options for...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (40): Gene Expression Colormap Download |
A research fellow at Harvard asked me to write a program to search for gene sequence, such as d-de?TCCd-deOao, and record the next 4 codes. The data file was 14Gb. He tried some matlab codes, and the system froze, or kept running and never stopped.I first tested using a loop method (V1.0). It...
Platforms: Matlab
License: Shareware | Cost: $0.00 USD | Size: 10 KB | Download (39): Fast Gene Sequence Search for Very Large Data File Download |
The script is a Matlab implementation of reference gene selection reported inJo Vandesompele et al, "Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes", Genome Biology 2002, 3 (7).
Platforms: Matlab
License: Shareware | Cost: $0.00 USD | Size: 10 KB | Download (39): Reference Gene Selection Download |
This application is an interactive simulation of gene expression that allows the user to: Explore a sample gene: Explore the correspondence between DNA, pre-mRNA, mature mRNA, and protein Map the functional elements of a gene. Create mutations in a gene and explore their effects. Design...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 348.16 KB | Download (46): Gene Explorer Download |
This is Gene Simmons Adiumy with his kiss custome and his signature Axe Bass, showing his tongue.
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 1.12 MB | Download (32): Gene Adiumy Download |
This script uses the gene name field(s) in a table downloaded from the UCSC Genome Browser to add gene names to an existing SVS marker map saved in the DSM file format. Note: Though the following instructions specify downloading a table containing genes based on the Mar. 2006 (NCBI36/hg18) Human...
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (47): Add Gene Names to Marker Map Download |
Build a gene network! The lac operon is a set of genes which are responsible for the metabolism of lactose in some bacterial cells. Explore the effects of mutations within the lac operon by adding or removing genes from the DNA. Sample Learning Goals: * Predict the effects on lactose...
Platforms: Mac
License: Freeware | Size: 1.14 MB | Download (35): Gene Machine: The Lac Operon Download |
Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)...
Platforms: *nix
License: Freeware | Size: 8.19 KB | Download (110): Bio::SAGE::Comparison Download |
Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...
Platforms: *nix
License: Freeware | Size: 19.46 KB | Download (93): Bio::SAGE::DataProcessing Download |